Protein Info for PS417_19840 in Pseudomonas simiae WCS417

Annotation: flagellar cap protein FliD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 462 PF02465: FliD_N" amino acids 11 to 107 (97 residues), 86.7 bits, see alignment E=2.1e-28 PF07196: Flagellin_IN" amino acids 131 to 186 (56 residues), 38.5 bits, see alignment 1.6e-13 PF07195: FliD_C" amino acids 212 to 443 (232 residues), 168.9 bits, see alignment E=2e-53

Best Hits

KEGG orthology group: K02407, flagellar hook-associated protein 2 (inferred from 66% identity to pfs:PFLU4446)

Predicted SEED Role

"Flagellar hook-associated protein FliD" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UPH5 at UniProt or InterPro

Protein Sequence (462 amino acids)

>PS417_19840 flagellar cap protein FliD (Pseudomonas simiae WCS417)
MASTTVNGVGSGIDIQGIVKSLVDADRAPKQTQINTQSQKATTQLSSIGKIQSALDAFRG
AIKSMTDDNSFSGLTGTSSNEKVATMTTGKGAANGSFNLVVNQLAQPSKLSTTTLTGGAS
TVVNKGDTATTLSISQSGKKFDVSVPPGATLQQVRDSINSQFGTSGLSANIVTDASGSRM
VLTSTTGGVGSDLTLSGNSGIDTGYKVIDEPKNAEYTIDGVAYTAKTNNITDAVSGVSIK
LLSVSPPVSSTDPTKAVTTISVSTSTAALKSGVKGFVDSYNALLKAMNAETKVTKDAAGN
SVSATLTGDANMRSLQSALRSEFNALSGNGQFKSLAQFGIGTDSNTGLLTMDDKAFDKAA
LTNAADINSMLGGKDGLLARMTAATDGYAKPTTGVFATRSSALSDSLKKLTKDQSDLDAH
VQDLTDSLTRKYAAMDSLVAQLRQQSNNIMGTLNALNNQKNS