Protein Info for GFF3872 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: exported protein, conserved

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 682 signal peptide" amino acids 1 to 17 (17 residues), see Phobius details PF05170: AsmA" amino acids 295 to 445 (151 residues), 62.7 bits, see alignment E=1.4e-21 amino acids 487 to 568 (82 residues), 33.2 bits, see alignment E=1.3e-12

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (682 amino acids)

>GFF3872 exported protein, conserved (Hydrogenophaga sp. GW460-11-11-14-LB1)
VVAVLALSVVWGELSGWPLLHRPIESAASRGVGVPVQMQGRVRTHLLWRPRLEVEHLRIA
SDERFGAPHLLDARHITLAWHWGDLWRWQRGDRLLLQRLQADQLDAHLMRLAGGDANWQL
GQQEDPPRTEEKNDPLGGLPRFGSLVIGQGQIAWKDAVQDVDLAIGVKGSEGEAVVGAAS
GYEATFKGRYRTLPMDLQVRAGSTLPLLQDPEAAPDAQWVPVRVAGTVASAKLLFDGQAA
ALLGTPRLDGALSFQGRSLAEVGQPLGITLPQTPPFDLRGRLSQDGGVWRLQASRATVGS
SRLTGDLRFHQLTQPRRLTGELTGPKLALADLGPAIGGEGGTAKAPPQQQAQGRVLPQRR
FDLPSLKVMDADVKVAIDEVDFGTEAMAPLKGLKTRIHLDAGVLRLEDLQASVSGGQFKG
RTQLDAHAQPAKWQARLDIAGVDIAGWMRGLRKDTAPPAPSANATKALKKEREQARQGGE
QAVRSYVTGVLSAKLDLRGAGNSTADILGSLNGPVDLTLRDGTISHLATEAMGLDLAQAL
GVLIRGDHPLPLNCARFDLQARDGVLEPRLAVIDNRDSTVLIQGNVNLRDETLALRLVTQ
PKDWSLISLRTPITVNGTLGQPAVGIEAKRLTGRVLGAIALGAAAGPAAAVIPLIEQGDK
TAGDPCVSAATTFPSSRAAPGR