Protein Info for GFF3864 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: Putative capsular polysaccharide transport protein YegH

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 526 transmembrane" amino acids 12 to 35 (24 residues), see Phobius details amino acids 47 to 69 (23 residues), see Phobius details amino acids 81 to 102 (22 residues), see Phobius details amino acids 125 to 147 (23 residues), see Phobius details amino acids 153 to 172 (20 residues), see Phobius details amino acids 184 to 205 (22 residues), see Phobius details amino acids 213 to 233 (21 residues), see Phobius details PF03741: TerC" amino acids 15 to 203 (189 residues), 160.4 bits, see alignment E=5.8e-51 PF00571: CBS" amino acids 302 to 358 (57 residues), 22.6 bits, see alignment 1.7e-08 amino acids 372 to 422 (51 residues), 30.1 bits, see alignment 7.3e-11 PF03471: CorC_HlyC" amino acids 440 to 516 (77 residues), 71.1 bits, see alignment E=9.6e-24

Best Hits

Swiss-Prot: 90% identical to YEGH_ECOLI: UPF0053 protein YegH (yegH) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 100% identity to stt:t0753)

Predicted SEED Role

"Putative capsular polysaccharide transport protein YegH"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (526 amino acids)

>GFF3864 Putative capsular polysaccharide transport protein YegH (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
MEWIADPSIWAGLVTLIVIELVLGIDNLVFIAILAEKLPPGQRDRARITGLILAMIMRLL
LLASISWLVTLTKPLFSVQALSFSARDLIMLFGGFFLLFKATMELNERLEGKDSANPTQR
KGAKFWAVVAQIVVLDAIFSLDSVITAVGMVDHLAVMMAAVIIAISLMLLASKSLTRFVN
NHPTIVILCLSFLLMIGFSLVAEGFGFHIPKGYLYAAIGFSVMIEALNQLAIFNRRRFLS
ANHTLRQRTTEAVMRLISGKKEDAELDAETAAMLADHDDSQIFNPQERRMIERVLNLNQR
TVSSIMTSRHDIEHIDLNAPEAEIRALLEKNQHTRLVVTGENEQEDLLGVVHVIDLLQQS
LRGEPLNLRALIRQPLVFPETLPLLPALEQFRNARTHFAFVVDEFGSVEGIVTLSDVMET
IAGNLPNEVEEIDARHDIQKNPDGSWTANGHMPLEDLVQYVPLPLDEKREYHTIAGLLME
YLQRIPQTGEEVQVGDYLLKTLQVESHRVQKVQLIPLHNGEPDQEM