Protein Info for GFF3863 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: TRAP-type C4-dicarboxylate transport system, small permease component

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 171 transmembrane" amino acids 12 to 36 (25 residues), see Phobius details amino acids 43 to 64 (22 residues), see Phobius details amino acids 85 to 105 (21 residues), see Phobius details amino acids 125 to 145 (21 residues), see Phobius details PF04290: DctQ" amino acids 24 to 152 (129 residues), 55.8 bits, see alignment E=2.4e-19

Best Hits

KEGG orthology group: None (inferred from 42% identity to smd:Smed_5702)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (171 amino acids)

>GFF3863 TRAP-type C4-dicarboxylate transport system, small permease component (Hydrogenophaga sp. GW460-11-11-14-LB1)
MKKVFPVLQRAADFVAAALLAIIFVAFILQIVLRYVFNWPVGWTTEVSLIAWLWLVLWGA
AFVLKDHEEIRIDFLTANVGRRWRIGFGIVAAVCVIVLFTLQLPAAYDYVSFMKVERSSY
LNTGFHVLFSIYLLFSVAVIVRNLWNLVQLLRGKDPADAAGDSPLQSGTAL