Protein Info for GFF3854 in Variovorax sp. SCN45

Annotation: FIG01269488: protein, clustered with ribosomal protein L32p

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 189 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF02620: YceD" amino acids 67 to 176 (110 residues), 73.8 bits, see alignment E=6.3e-25

Best Hits

KEGG orthology group: K07040, uncharacterized protein (inferred from 85% identity to vap:Vapar_1386)

Predicted SEED Role

"COG1399 protein, clustered with ribosomal protein L32p"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (189 amino acids)

>GFF3854 FIG01269488: protein, clustered with ribosomal protein L32p (Variovorax sp. SCN45)
MKREFAPERLNVPAFAAAAATIEAADPVPNYARLTAELAAPAPDAVVDWVASGEERPGAD
GKAVPWLHLDAEATVPLVCQRCLSPVDTLLSVDRWFRFVADEAAAEAEDEESEEDLLVVS
RDFDLHALIEDELLMEIPVMPVHDVCPTPVQLSSSDEDFQAAEEAKPNPFAVLGALRSRK
PEDGSDEGK