Protein Info for GFF3847 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: Putative inner membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 703 transmembrane" amino acids 245 to 262 (18 residues), see Phobius details PF13226: DUF4034" amino acids 29 to 306 (278 residues), 394.6 bits, see alignment E=1.2e-122

Best Hits

KEGG orthology group: None (inferred from 100% identity to stm:STM2135)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (703 amino acids)

>GFF3847 Putative inner membrane protein (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
MEQDDRLLNAMFEMCNHKNPLNDGQREWHIADIPGLLREERYDELDERYNQALTESFTSR
EAEKRYFFAWNQMDNPFYDMDTLVEAGPQGLALIKNWQRARPRSTHAWLAEAQYWNHRAW
LYRSYGWARETTRAMWICAAACNERMVIAALNAIDCEPRQWMAAALTSTNSKVFGQPEWL
VEFLVGADVAGQPLMEDLAEYHRHSPQEVDALMAHSGLSFTDAVCPNLPRPSVLPECNDD
AGQKYWLAVCLAIFPTAFYVLDEYIPFRMPRWRGSHEEIREFLESSVCDHLSAAEREHLE
LLIWWDDHRDLRIKEVDSPAEQERIIAKAEEISLRAHIQESRHNALEWLRVCYSDLDDND
ALWRTLQRSIVEKVKLNNYFSDDTIKFALRDFPDTWWMYNFLCQNAQQTEFAVPKIRRGY
FQYAGLLGFEKDEAQGLAWLDSVADIQYNHNWRAAIKNFDWFGLPEHFVPLAELGAQRNI
PAALNLLGLEHNNKENNGLLPYDPAIALGYFQRAAEILHRQLALRESTPYKLIDNGGYTD
YENDLQNIHFSIGICNQRLSKQEPDTEKRSAYEKELLDNLWLAHQFGHKEAWGLFLLNIF
EVKDITLAHKHLELVQQEANKGTLHAMVTLSRLHGNKHDRTLFNMKLSARWAHFAFTLYP
DNEIVMDCLDHLHFDSFWKRFRFAWYTVRIPNSELPGQVNSMV