Protein Info for GFF3840 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: Transcription regulator [contains diacylglycerol kinase catalytic domain]

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 299 signal peptide" amino acids 1 to 16 (16 residues), see Phobius details TIGR00147: lipid kinase, YegS/Rv2252/BmrU family" amino acids 1 to 293 (293 residues), 366.2 bits, see alignment E=9.7e-114 TIGR03702: lipid kinase YegS" amino acids 7 to 298 (292 residues), 494 bits, see alignment E=1.2e-152 PF00781: DAGK_cat" amino acids 8 to 129 (122 residues), 98.4 bits, see alignment E=2.4e-32 PF19279: YegS_C" amino acids 151 to 288 (138 residues), 43.4 bits, see alignment E=3.1e-15

Best Hits

Swiss-Prot: 100% identical to YEGS_SALPC: Probable lipid kinase YegS (yegS) from Salmonella paratyphi C (strain RKS4594)

KEGG orthology group: K07029, (no description) (inferred from 99% identity to seg:SG2173)

MetaCyc: 85% identical to lipid kinase YegS (Escherichia coli K-12 substr. MG1655)
2.7.1.-

Predicted SEED Role

"Transcription regulator [contains diacylglycerol kinase catalytic domain]"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (299 amino acids)

>GFF3840 Transcription regulator [contains diacylglycerol kinase catalytic domain] (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
MANFPASLLILNGKSADNQPLREAITLLRDEGIQIHVRVTWEKGDAQRYVDEARRLGVET
VIAGGGDGTINEVSTALIQIRDGVAPALGLLPLGTANDFATSAGIPEALDKALKLAIAGN
AMEIDMAMVNDKTCFINMATGGFGTRITTETPEKLKAALGGVSYLIHGLMRMDTLTPDRC
EIRGENFHWQGDALVIGIGNGRQAGGGQQLCPTALINDGLLQLRIFTGEELLPALFSTLT
QSDDNPNIIDGASAWFDIHAPHEITFNLDGEPLSGQEFHIEVLPGALRCRLPPDCPLLR