Protein Info for GFF3836 in Variovorax sp. SCN45

Annotation: Cyclic beta-1,2-glucan synthase (EC 2.4.1.-)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 2600 2721 transmembrane" amino acids 425 to 447 (23 residues), see Phobius details amino acids 453 to 474 (22 residues), see Phobius details amino acids 828 to 846 (19 residues), see Phobius details amino acids 852 to 873 (22 residues), see Phobius details amino acids 951 to 971 (21 residues), see Phobius details amino acids 976 to 995 (20 residues), see Phobius details PF10091: Glycoamylase" amino acids 1194 to 1393 (200 residues), 56.7 bits, see alignment 3.7e-19 PF06165: Glyco_transf_36" amino acids 1460 to 1705 (246 residues), 208.7 bits, see alignment E=1.6e-65 amino acids 1961 to 2198 (238 residues), 162.2 bits, see alignment E=2.5e-51 PF17167: Glyco_hydro_36" amino acids 2228 to 2652 (425 residues), 359 bits, see alignment E=4.7e-111

Best Hits

Predicted SEED Role

"Cyclic beta-1,2-glucan synthase (EC 2.4.1.-)" (EC 2.4.1.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.4.1.-

Use Curated BLAST to search for 2.4.1.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (2721 amino acids)

>GFF3836 Cyclic beta-1,2-glucan synthase (EC 2.4.1.-) (Variovorax sp. SCN45)
LSAAAVVDRLEGLSHYARTLLLGPHDPVALPIRAELFGVQRFEQHGRSLAQAQPVQDEHH
HARQGAPFFPRVDENLASLRSAFDYIALTSLSGRYVSPAAEWLLDNFHLVEAQLQQIHDG
VPRSYYARLPKLATPPLAGLPRVYGIAWAYVAHTDSVLNKTLFTAFLNAYQDVDELTLGE
LWALPTTLRVVLLENLRRMAESIAENKVAREIAHAAWDAAAKLSTQDLDVLYRALQSHGL
QDNYLTQLWQRLPVERSEDMPPLVRWTEQHCPNGPALIGEAQNAQAAANLTVGNIITTLR
MIGQVEWSDLIEPVSRSLRVLRELPSFANESEITRQQITHAMEQVARGTERPEREVAQAV
VRLAAAAPAEDAGAETDRADGTAGYYLFGQGRPALIAALQADSPTGRATRTAGMGQARSH
RGWRLPVYVGSVALGTALLLTAVVHGLPHRGDWTTVLALVLLAWPLSEALIALAQRIMAE
SVRVQALPRLDFASGIPERHRALVVIPTLLSSTANNAQLAHRLELHWLSNREDHAQFALL
TDWADAAQATLPTDAPLLDDALQRIAALNAKYPSADGAAPRFLLLHRPRTWSDTEQRWMG
WERKRGKLEMLVRLLATGDASGFLPLAPGQQLAVGRTPYVLTLDSDTGLPPGALRDLVSI
AAHPLNTPEVDGGSRRVVAGFGILQPRIVTPFPTRNERSPYHWMFAGQCGLDPYGSGASD
IYQDVFGSGSFTGKGLLNVRALHATLDRRLPDGAVLSHDLLEGTVARCAMVSDVVLVEDH
PHHAGVAASRVHRWVRGDWQLLPLMWRARRFGIDALGLWKMGDNLRRSLVVPASFALLAL
VIFTQAMPLGWALAAVASALTLGPLLGALAGLVPTRRAIELRHFFDVGAVELLRSMAGAA
WQFVQLAAQTRLLLDAWFRATWRLVVSRRHLLEWTTAAQAQAQASQQLAPFLRNAAASSV
LCLALAVAAHWSAYPVLGPLLFLLWALAPVAAWWSSRVEPKAADPLSAERRSYLDKLAHD
TWRFFEHVVGPEDNHLPPDNLQLEPQPTIAHRTSPTNIGMYLLAACCAREFRWIDTAALL
ARLTATLDTVDRLQKHDGHLFNWYDTQTLAPLPPDYVSSVDSGNFAGHLVAVAQACRAFA
AEGGHPQEAPALEALARRCDALHDGMDFSGLYDAKRHLFHIGLRVEENVLDASYYDLLAS
ESRLLSFLAIAKGDVPRRHWMALGRPFLLVGFQPSLKSWSGSMFEYVMPALVMTEPEDGL
LQVANAAAVAEQQAFGRAQGLPWGVSESAYFGQDHSLAYQYSPFGVPRLALRRTPPADRV
VAPYASVMAAPFTPEAAVVNLELLESLGARGEFGFHDAVDFTASRQTEGQDFTVVRNFMA
HHQGMSLVALCNVLCADAPRRWFGSAALVQAHESLLHERTPRQIIGSADPRTPPEPGQAE
LAPLFQPRVVDPMAPGFQPTHLLSNGRYTVALRANGAGVSRWHAFNVTRWRDDPLRDSYG
TFFYVRDEGQQALTSLTALPAPGEGWRYRARFLADQVQFDATGPGLQVRTTVLISPEDDT
ELRNITLHNGGDQTRTLELLSYFEPVLSNPKADEAHPAFANLFVESRWEPAWRALLMSRK
PRLHGDAVAAAAHFLASADAHVLSIDCMTDRRAFIGRNRTLADPALDAQPLAPNGQQVNG
LDPIACLRVRLSLAPGATARLSFATAAGESIEALMPGIDRYMQPMHVERATRMAATLAQV
RLRDLSIAPAQNVALQDLTTILTYTTPRVMSDRGLIDLRQIWRFGISGDKPIVLVHIHSM
IGMGLINTLLRAQPWWGFGGVACDLVVLNSEPNSYLMPLQREIEALRSRVTQQTQNSFPR
NDTAGFYLLRDQDVVPSEKAALSSLARVVFTAEGRPLEVQVAALHEARNDTTPGTDDAAA
PRGVPLLSHATATQATGAPTGDFDAETGEFHFEVGAGRHTPRPWVNVIANANFGFQVSEW
GTGFTWAGNSRMHQVTPWSNDPVQDPAFEHYLLQDVATREMLPLTPAGGSAGQAVHHVRH
GQGYTVFECRQGELAIETTFFADRDDAVKLVHVRMRNEGAGQRRLRALAMVEWQMGAARG
ERRTVHCWKPEDQPAVFGEQRESSAGFGGSAAFLLLAGLPGATQWTCDRSEFFAGRGIVE
VPDTLAQRAGSGLDACAAISGEFVVAAGEMASFSFVLGHADNADAALGLARRWRQRDVPE
ALAQVHAFWDELLGRLQVRTPDPLFDALVNRWLVYQTLACRLWSKAGFYQAGGAFGFRDQ
LQDAMAFALTDPARLREQILLNAARQFPEGDVQHWWHMPGGAGVRTHFSDDLLWLPYASA
HYVEVTGDASLLDRTAGFIEGPAIPDGAEDAYYAPQRSGQTATVFEHGARAIDRSLKTGM
HGLPLMGTGDWNDGMNRVGNEGRGESVWLAWFLCRVVEQFAPIAQARGEHERAARWTAAR
TGWIAALHAAGWDGAWFRRAFFDNGAPLGSSANDECRIDLIAQAWSVLSGASDAAHTGPA
MASVKKLLHDEPAGLLRLLAPPFANSTNNPGYIQAYPPGVRENGGQYSHGAVWALMAQAL
QGDHEAAWQSFEGLSPAHRAQHPERGPVYELEPYVMAGDIYGAAPYIGRGGWSWYTGSAA
WLHRAAVETLLGLSVKGSRLSLAPHVPAHWPGFEIALRLGARTLTLQWGELPGAAAPTQH
LAAGEWIDWQALPAGAVLRVA