Protein Info for GFF3828 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: UPF0028 protein YchK

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 267 PF01734: Patatin" amino acids 10 to 169 (160 residues), 136.3 bits, see alignment E=7.8e-44

Best Hits

Swiss-Prot: 36% identical to YLBK_BACSU: Uncharacterized NTE family protein YlbK (ylbK) from Bacillus subtilis (strain 168)

KEGG orthology group: K07001, (no description) (inferred from 68% identity to pol:Bpro_3091)

Predicted SEED Role

"UPF0028 protein YchK"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (267 amino acids)

>GFF3828 UPF0028 protein YchK (Hydrogenophaga sp. GW460-11-11-14-LB1)
VATRAPRLGLALGGGAARGFAHVGVIQVLEQNGIRPDLVVGTSAGSMVAAMYASGKTAAE
LEATALSMEEATLTDWSLPIMGRGMLRGEALTRYVRQAVGGKLLENMSIPLGVLATDLAT
GQGVLFRRGDAAQAVRASSAVPGVFSPVHITGRDYVDGGLVAPVPVRYARDMGAEVVLAV
DISSAPEGNAAVGNVQVLLQTFAIMGQSINRHELAGADVVLRPALVGVGSADFSARLRAI
EAGRAAMQAALPQLRTQLARRLPVNRP