Protein Info for GFF3819 in Variovorax sp. SCN45

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 435 transmembrane" amino acids 29 to 49 (21 residues), see Phobius details amino acids 53 to 76 (24 residues), see Phobius details amino acids 98 to 119 (22 residues), see Phobius details amino acids 124 to 145 (22 residues), see Phobius details amino acids 165 to 191 (27 residues), see Phobius details amino acids 197 to 221 (25 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 83% identity to vpe:Varpa_1488)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (435 amino acids)

>GFF3819 hypothetical protein (Variovorax sp. SCN45)
MIARDSLPPPPPFWHRLNSFFAFPFQLRPLAYGLVLSFCSLLFEGVFFLPDALALVIIEI
GIMLAASRYSFKIIALGARGIRDSADFGRESSDEWTYLPWKLFAITLVQALLIGWLGWYA
PILGTVGLFVMSFTFPAAVIVLVQSGSFFQAMNPGHVMDAMRIIGWPYALLCFFLFLLSS
GAQVALALVLPMFDGRIVLPIANFAFIYFGWVMASLLGYVMFQHHDAFGFDAVPGSELND
GAPVDRRTPEQIAAQRTDAEVAQLVTEGDLIAALGIAYEAQRTAAHDDLAAQRRYHRVLA
LMPEKKDTMLDQARRFIPLLMRRDLSSEALKVFKACRAQDKAFSLDDPAMVIAMARAEWR
NGDAHATLALLSGFDKRFRGSEAIPQAYELAARALVQGLGRSDMAQPILTTMEARYPNSE
QTQEVRWLLRPAPVA