Protein Info for GFF3810 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: Putative membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 195 transmembrane" amino acids 33 to 53 (21 residues), see Phobius details amino acids 65 to 91 (27 residues), see Phobius details amino acids 103 to 122 (20 residues), see Phobius details amino acids 128 to 150 (23 residues), see Phobius details amino acids 169 to 190 (22 residues), see Phobius details PF04893: Yip1" amino acids 5 to 178 (174 residues), 120.7 bits, see alignment E=3.1e-39

Best Hits

Swiss-Prot: 92% identical to YOHC_ECOLI: Inner membrane protein YohC (yohC) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 100% identity to spt:SPA0682)

Predicted SEED Role

"Putative membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (195 amino acids)

>GFF3810 Putative membrane protein (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
MNHVWGLFSHPDREMQVIKSENETVSHHYTHHVLLMAAIPVVCAFIGTTQIGWNFGDGNV
LQLSLFTAFALAVLFYGVMLAGVAVMGRVIWWMARNYPQRPSLARCMVFAGYVATPLFLS
GLVALYPLVWLCALVGAVALFYTGYLLYLGIPTFLNINREEGLSFSSSTLAIGVLVLEVL
LAITVILWGYGYRLF