Protein Info for GFF3809 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Glycosyltransferase (EC 2.4.1.-)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 612 PF13439: Glyco_transf_4" amino acids 16 to 161 (146 residues), 42.7 bits, see alignment E=1.2e-14 PF13579: Glyco_trans_4_4" amino acids 17 to 118 (102 residues), 31.7 bits, see alignment E=3.7e-11 PF13692: Glyco_trans_1_4" amino acids 213 to 305 (93 residues), 50.2 bits, see alignment E=6.8e-17 PF00534: Glycos_transf_1" amino acids 213 to 304 (92 residues), 42.8 bits, see alignment E=8.4e-15

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (612 amino acids)

>GFF3809 Glycosyltransferase (EC 2.4.1.-) (Hydrogenophaga sp. GW460-11-11-14-LB1)
MRVLFVSTYPHLPDIVGGLQTTTHDLCLAICAMGAEAAVLCGQRTAPTDDTDAPATRDDS
LGYPVLRSPRPARDLAATATRFDADVIVVQNGTTLTPVVLAALDTGRPTAVYLHNVETSQ
LGGHLVADPSLLYLANSDFTAQRWHDLYGLDCAVIPPVVSPQDYLAAGTGDKVLFVNPTP
IKGVERMFELAAACPELPFLVMESWHLDPHWRAHCQARAARLGNIEWRGPSAAMHEVYGQ
SRVLLMPSVWEESFGRAVVEAQLNGLPVLASRRGALPQLVGDGGAVLEPHAPVAEWAAAL
RRLYDPFATAERDAARRLGAAHVAGTTTTVARLLGLLQLHAAQTGGREPVTGQTAAPPSV
TSAPAVHEIPPRQPRREDCMFYHSYTLADGEEVSGQWDLRPNTAQYLGDVNFAGRSVLEI
GPASGFLSFHMEAAGAQVTCLEPPMSHLWDVVPLEGFDPNWRESFSHHIEGVRNSFWYVH
QQRHSRVRMIEGDPYALPEDCGPFDVGLLAAVLLHCRRPFDMLQSVARRTRRTMIVTDAY
DASLGPRPLVELKPHRDVPQVDTWWQFTPQYMVSALGLLGFTEARVSLHEQRQPGLDRMV
PLFTVVAERPGV