Protein Info for GFF3808 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Glycosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1663 PF13432: TPR_16" amino acids 80 to 146 (67 residues), 18.9 bits, see alignment (E = 1.4e-06) amino acids 119 to 179 (61 residues), 17.8 bits, see alignment (E = 3.2e-06) amino acids 254 to 315 (62 residues), 30.5 bits, see alignment (E = 3.5e-10) amino acids 389 to 452 (64 residues), 30 bits, see alignment (E = 4.8e-10) PF14559: TPR_19" amino acids 87 to 153 (67 residues), 28 bits, see alignment (E = 1.8e-09) PF07719: TPR_2" amino acids 384 to 417 (34 residues), 23.1 bits, see alignment (E = 4.6e-08) PF13844: Glyco_transf_41" amino acids 808 to 975 (168 residues), 49.1 bits, see alignment E=2.3e-16 PF13641: Glyco_tranf_2_3" amino acids 1032 to 1244 (213 residues), 73.1 bits, see alignment E=2.6e-23 PF00535: Glycos_transf_2" amino acids 1035 to 1151 (117 residues), 67.2 bits, see alignment 1.4e-21 PF13632: Glyco_trans_2_3" amino acids 1112 to 1260 (149 residues), 27.5 bits, see alignment E=2.3e-09 PF13692: Glyco_trans_1_4" amino acids 1490 to 1627 (138 residues), 71.2 bits, see alignment E=9.1e-23

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1663 amino acids)

>GFF3808 Glycosyltransferase (Hydrogenophaga sp. GW460-11-11-14-LB1)
MDDPAGTDALLGSAWQAFRAGQHDAALHLALQAHTDAPTPQAAAALGHFLIHAGHLVAAE
DVLLAAGERAPDHAPLLACLGLLRQRQGEPERALALYEQAIAATPWDAAEQVQLHLSRAQ
CLVALGQAARAADCLADGLARHPDDPELLTTLADWECEHGHLDRAVEVARRLVDAFPDQA
PAWHLLGALQQRAGDLPAADRSFNEVQQRDLGRWDALLRRAQIQVQWQRPVDAEWLLMQV
LASQPDCLPARALMARVQLDLGHIETARQQLLQSLRAHPRHADAWLVLAQVHAQRRHWTL
ARRALARAARAGSDEAEVLRLLGWIARDQGDLATASGAVRELLRHRPDEHQARVQAAFVF
AAANDLAPAALHAKAAVAQDPASAPAWRALAQVRYRQQRLDEAQSAIETALQLQPEHADS
LSQLGWILLDGRRFGAARLAFLHACELAPDQPVPLRELTEACLRSGAFALGHQTLDTLQR
LCPDDAAGRLLRARLLGEDPASTPTEHERAVALCRELIVGRERGAEPVRALLRLHGLGAA
GAPAALALVPHADRRAAYREAIAEGTARHGHDALLRLARAAAHDFPQDPWLASAALYAQS
LSATATRDSLAEAARHVFRDLKLRSGLHPWQRPDLPRRPGARPRIAYLAGQLHERLLRRV
LASHDPLAAEVFLFAHRPMAGLPAHIHQEPLDPPELARACVANRIDVVIDAGGLHPFEGQ
FEVLQALVRRLAPLQVGWLGCWGPAGGLFDALLCDAVAVPDAHAAQHEEALWRLDGGQWC
WDPPTHAPAPLPPPVQRTGAVTFGVVARGLRLNEASLQAWARAVAAVPGSHLRFVGEMAH
DWPQRARILATLNAHGLASERVSFDPPRPYEDLLLWFQQIDLVLDSFPGNGGLSLLDPLW
MGVPVVTLSGDRAGARQGHAILDALGLQTWVADTPERFVDIAAALAGDTAALAQHRATLR
ARLLDAPLTDGRRVARQIEALCAQAVASADPGLFAADPKTRLRAQARRALQVWLDQPGSL
IALPEPAPDTVPDLSVVVVLYNQAGLTRRTLQALADQRGLSFETIVIDNASSDETAQLLA
RVSGARTVINADNTGFLLAANQGAALARGRHLVFLNNDAIVQQGALQAARDRLDADPAVG
ALGGRIVLSAGGLQEVGNLIFRDGNAHGIGRDEDPFCPAAMTSRATDYVSGVFLAVPAPL
WRMLGGFDEAFAPAYYEDADFCLRVWRAGFRVVVEPGVLVEHVEWGSAPGDEAGQRMRAN
RARFQARYADWLQDRPYPMAPRLDGDRWRSPEDQPRRPRVLVIDNEVPHMVKGGGLPRAR
HMLQALRDWPVSFFPLWQTDDDWREVHASLPSSVEVVLHHGLARLEDFLERRRGVYDVLL
VSRPPNLRALQPLRARRPELFAGMRLVYDAEALFALREIAEAGVRGKPMPRAAAQAHLAR
EIALARGASDVMVVSQRDAQCFQAAGHRVTLLSHSIAVRREAPGLAGRSGLLFVGALHPD
TPNEDGLVWFIEQVMPLLRARLPHPPVLSVVGINRSARVMALAGDDVQVLGPRDALEPLY
DSARVFIAPVRFAGGVPAKVIEAAAHGIPVAASALLVRQLGWREGIDIQAGRDARSFADG
IARLLHDDGLWHRQQQAAWQQCAERYAPQRFGQRLRHVLEGSA