Protein Info for GFF3805 in Variovorax sp. SCN45

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 394 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details PF07661: MORN_2" amino acids 100 to 121 (22 residues), 11.4 bits, see alignment (E = 1.7e-05) amino acids 126 to 143 (18 residues), 13.4 bits, see alignment (E = 3.8e-06)

Best Hits

KEGG orthology group: None (inferred from 73% identity to vpe:Varpa_5436)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (394 amino acids)

>GFF3805 hypothetical protein (Variovorax sp. SCN45)
VTSPRLHLRLLGFGLAALVPLLGATAAHAQQDCELNGRSVNPDNGATTAGQTGILRCKNR
ATGELQREEQLQNGVSMGLVRIYEKGKLAKEHTLNAKGNLQGRAREFSPNGRVLREATYD
DGQERGLARSYYPDGKLRRVIFYPDTGSGSERGSVEFTERGQLSALRCADAPTLAPVVDD
AKLCGFSGGPSQVDLFDARGNLRSRLSFLSGKRVRSQSFYDNGKTAALDETMGNQRTEQN
YSSEGVKRRETVFLLVERAAIRQREQSFSEKGTLVRDQRWNSAGEPIGDDSYYLNGQPSS
KSAYSGSGNGRVVDITEFYDSGQRAAQGRYQIAGRGRQVPVGTHQRFNEKGTLIAESSFD
AKGRVTRERAWDENGELQRDDEVFEDGSRKAYAK