Protein Info for PS417_19405 in Pseudomonas simiae WCS417

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1744 PF20178: DUF6543" amino acids 94 to 290 (197 residues), 32.5 bits, see alignment E=3.5e-12 amino acids 769 to 1037 (269 residues), 78.2 bits, see alignment E=4e-26

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UCQ6 at UniProt or InterPro

Protein Sequence (1744 amino acids)

>PS417_19405 hypothetical protein (Pseudomonas simiae WCS417)
MTLPTDHPSAAPSFDPDDPHALQSIREPLMRRIAAATRPSRLINQIALADSRCKESTHEL
ARLIGRSPKILAVIRAQLRKAFAMEPDSLLFTESRPPGIPHKVDSLTDRALSLLALPTVV
TNVNQFTALSVRGDPNKQLPYTPQEVLQRVIALRLFERLDHAASRYWNTLVPGSWLTRRE
RWVELQKALFADRAFMALQLEELTSAGMAMVQALIDAPAAAARERAGGEWASVKVSQLMW
PGTPAVAIPGALYLYREGNSSDASHVVYLPGAVRNFYEAASFNALQCDLLALNESLFHEL
WDCLPISRRKALHRPADISPAAGFICGLEVMDDALEQGAQALLAGQWNNELGCAVKVHFA
HVFSDQKPAPQPLNAALFLTHAQCARKQLAGGARLGSMGDHLLRWDQQRRAEEIVFASSA
PGLALLTEEQQVKRYEKRLLALLNLDDISAETPAYLEIMSLMGQLSVHAFVLNTAMQNAR
SRLLELAFWAERPDGAGRARRVNRFMQAQTESLRCEVQLLHRLKLIGTAHRDLVIEVVAQ
PSATRSADTDTRVLSIAVGSEPDAFYPLHNVWVITTAAAMRVPTRQHPVVLYAFGVEGGV
KAFSCVDALTRSLKASLSSLDGSVLWGAVERDKRRDLRAHAARATLAVRYLEIKGKPALA
ALKKLLGCYHRLETSTEDITRIFSEVKGPELSRALLRGELEEQLKIPVNNALSQAWANVE
LLRKTVSEAKKLPTWLAYATRAQRKKFMHLQRLYLSSTYAFENRLEYVLPDLYTFARRTL
KTRLSQDGISPQWDIDAPFIDMPDGVYGSFCVGSATCTVGDRNIRLTPTAERTTFSLLQL
ALHNLDPLAPWTKWRLNRARYLKPDWQQRLNAGYLISLVSSLDIGGQYDALINEVFYPRV
DAHGRPGEGRIPELLNRALRTGFEHHLFSAAQRGLSATAQRVFNTAMAARTPQDLLKNQH
QLQLYVIQLVGHTMLHDRYIAGIVLVHDETSGVCVVYWPEAAQNLILTEYGSLQRAHDEL
NRIGALPDNAKALARQVAPGWAIDPITHHPDGITFSLLDRLPGFFMVKGVWQGLEFVRSF
SIKHLEPTPIPDLIEAQVLEQIACDPQHWLAVVPTSHSHAQALLYRASVLELQRRTQAAS
DSGKTLQEYRARRLGEQSDATRRRLVGFFSPLYGMFNEAYELLLVARRFHRFGDAHDAVD
VGFMSVFLAIDLFSNFIPGPRKAGSAVPRIARPTLSAVLGRIHRLRMAENSGPSRFAPPA
VTQLKALERFKVKGVPEGAVALKGASERGVYVKNGECFVEDGTHQFPLYRRGSEQWLRLK
NRQSPGQDELILTIHQPREWLLSADAPQPMAGPSSGSLNPWRPPTPPPPDWRPPTVHGAT
EDAIRQSMTTSDHWLNWRTQPPDTQMSSPAPGIFHNALDARGFPHYLLQMAPPDAGVLDL
WSGYYRLLPQGDQAPLDGIVFIHRNEPLVSLATLSLERWASSELHEQPFPVSRNPAGHWQ
VHKRLFDRPLSQSVGTAFPTLTAKSREFAVARIIELSGPERPATASHMLNVRATLDNWLP
AAPARPGQTDDLLRMLRATERGRTSIYISQEDKAPGFTRVDFRIHNLDPALRPRGGRQTE
QRGIAMRQAVTRELQQQGFDVQQVQVRRSNVLVHDLIATHPLSSSNEVYYLSTHWTYAGT
IRLNTRLTNEWFKKTFIDHPHLLPLASVKRAMRENRLIRIVAGIQWSTEGMSQPSVYFAK
VSPS