Protein Info for GFF3785 in Xanthobacter sp. DMC5

Annotation: Beta-barrel assembly-enhancing protease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1182 signal peptide" amino acids 26 to 26 (1 residues), see Phobius details amino acids 48 to 48 (1 residues), see Phobius details transmembrane" amino acids 27 to 47 (21 residues), see Phobius details PF13432: TPR_16" amino acids 86 to 145 (60 residues), 20.5 bits, see alignment 2.7e-07 amino acids 237 to 292 (56 residues), 21.2 bits, see alignment 1.7e-07 amino acids 454 to 510 (57 residues), 21 bits, see alignment 1.9e-07 amino acids 647 to 709 (63 residues), 17.5 bits, see alignment 2.3e-06 PF14559: TPR_19" amino acids 454 to 519 (66 residues), 29.8 bits, see alignment 3.2e-10 amino acids 652 to 709 (58 residues), 27 bits, see alignment 2.3e-09 PF13283: NfrA_C" amino acids 1007 to 1178 (172 residues), 238.2 bits, see alignment E=2.1e-74

Best Hits

KEGG orthology group: None (inferred from 80% identity to xau:Xaut_1748)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1182 amino acids)

>GFF3785 Beta-barrel assembly-enhancing protease (Xanthobacter sp. DMC5)
MTTAIHFRTSPAPALDRDRKRLLRDIALGHLLATSIAALTLAAGPVWAQSPQPSQAPQAQ
QTPQSPQATPAPQPPELTGAAWVAADRAYAAQREKRYADAVTYAREALKLRPDVPRLWLL
LMDALDAQGKTAEAVVAGNAAIAAGITDQALTARVRSQSRVLAQEPSVAANKALEASNPK
AAIEQARKAVALVPDDLSYRVLLVYTLLADGQLEAADKAASEAIQVDPQSFLPRTLRGYV
RMRLGKVAEAEQDFDTALKDEVLTGPTAHDARLVMADAAIAAGHPQRAIKLLEPVEPDAA
VQARLRVARAQERNPKVVPANAAQTLPVPFQKCIDTPYGPSCSLIPATTPPGGGVSDTPG
YDAALEAFGAYREGNDNLSEARIREALKENPGNAQWRRLLIDSLDRSKKYKELDVAIRDA
ISQGDNDPSLIALRAANDKRLAEPMAVQAIKDIGRGKATNAVTSARQAVERAPDALIFRI
VLIDALMAAGQFKDAETAASGAVADNPNEPLPHILRAWLLQKTGQRAEAVQEFDTVLNSN
LLTDLEELNYRLIAANAAMAAGQPEQALKALEPLDAGKNKEVGVLRKQAETQVKAPNAAK
PSLQQPAVLCQPTSYGVICSVFANPQMQAPGVAGLNPGSPGYAAASAAYAAFGRKDYATA
IAEARRAVDAEPGNRNYQTLLLNALSSAGRYSEAEAVANRLLAASPRDATLLVQRANLRM
QAKDFSGAVADYKAALGSPNLPPAQVRIVRLGLADAALSAKQPEVAIWALQPYANEDSYE
VQARLGFASLALDDKEGALAAFTRAAARARTSQERMAMLSARIGVLSQLGRKDEARALFQ
NAYNSGALRGMKAVDLAVLASQAGDDELAYEYFSEANSRWRLRGTNLINAAYNARRTYHN
AEAVDYFKSAIDEAREGKLQLDPQYLFGLRREVAELTRTWGAYASVSYGPVGVAPGSYLV
PQTSNGANHTVGAGGEIYWRPPGIGYRDGSIFELFVRGFGTVYADNGGATGFDTIQGSVG
ARWKPFSTENLVFEISYLFPVGQFSRNDLLLRAAYSKAEGTDLRVDVDNWRAWQIYADYN
YFVSLPETVATFEGRYGQAFRMDAISDHLVLWPYIAIGGGYDTAYATPFAMGIGPGITAR
YWFNEDEYTAPRSYLDFTLQYRWKLAGDDRAQGIFAGAFLSY