Protein Info for GFF3779 in Sphingobium sp. HT1-2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 363 transmembrane" amino acids 26 to 51 (26 residues), see Phobius details amino acids 63 to 81 (19 residues), see Phobius details amino acids 87 to 106 (20 residues), see Phobius details amino acids 113 to 130 (18 residues), see Phobius details amino acids 148 to 166 (19 residues), see Phobius details amino acids 190 to 208 (19 residues), see Phobius details amino acids 214 to 236 (23 residues), see Phobius details amino acids 247 to 265 (19 residues), see Phobius details amino acids 267 to 282 (16 residues), see Phobius details amino acids 293 to 312 (20 residues), see Phobius details amino acids 324 to 344 (21 residues), see Phobius details PF04632: FUSC" amino acids 24 to 163 (140 residues), 47.2 bits, see alignment E=1.4e-16 PF13515: FUSC_2" amino acids 29 to 158 (130 residues), 59.8 bits, see alignment E=3.1e-20 amino acids 238 to 334 (97 residues), 26.7 bits, see alignment E=5.3e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (363 amino acids)

>GFF3779 hypothetical protein (Sphingobium sp. HT1-2)
MPRPFSSLLDRVTPRTIDELECALSVLGAILLAHLLGATHVSWAAFAGYMVMRGHAAETL
ARGVLRIVGTVAGGLIALGSAPFIVGYWPAAAAALALMGTISLYAAITSRRSYAWLFFGL
TYAMVVLDKIEHPAIALPEFVQTRVLETLAGIAASLIVSLASTLTLRRRWPAKRTPAATG
AGWHGDSLRHALQAGVALALLVALNAWIPVPALAQGAIMIMAVMLLPVTGIGSSGLAPVS
QRILQRMIGCIGGALFAAFFLVAGADNMALLLGATAIGVMLGRHLENGDPTHRYVGTQFT
LAVLVMLVPDRYDQLVLEPGVERLMAIFIGMAVLMPVLLVGHLLNGRRADEATAPASGES
GGV