Protein Info for GFF3778 in Variovorax sp. SCN45

Annotation: Wax ester synthase/acyl-CoA:diacylglycerol acyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 566 PF03007: WS_DGAT_cat" amino acids 4 to 275 (272 residues), 228 bits, see alignment E=1.9e-71 TIGR02946: acyltransferase, WS/DGAT/MGAT" amino acids 4 to 467 (464 residues), 444.8 bits, see alignment E=1.9e-137 PF06974: WS_DGAT_C" amino acids 316 to 460 (145 residues), 97.9 bits, see alignment E=5.4e-32

Best Hits

KEGG orthology group: None (inferred from 88% identity to vpe:Varpa_5465)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (566 amino acids)

>GFF3778 Wax ester synthase/acyl-CoA:diacylglycerol acyltransferase (Variovorax sp. SCN45)
MKHLSGLDATFLHLETPEMPMHVGSLNVLDLPKGYKGDFYEDAKNFMASRIHLADVFTRK
LALMPFDMTNPVWVEDNDIDLDYHVRHITLPKPGTNRQLQQYVARLHSTLIDRSRPMWEF
FIIDGLKSGQVALYTKVHHAGIDGQAGVEVGKAIFDLEATGRVVKPPRSRPRSSGYQLGM
AELASAALRNTAQQYVKLFKMAPAIARAIGGLAKPDEKAAEKDAAAAPKKFNLFAPRTSL
NVSITNQRTFAGRTISLAETKYIAKHFGVSLNDVVMATVSGALRHYLADNNELPAKPLVA
GVPVSLREAGDQTANNQASMILVSLATDITDPVQRLKAINASSNSSKSTMNRFKAVILDD
FPTFAAPWLVSGIASMVGRSGIVNLLPPAANVAISNVAGAPFPMYFAGALVTCYYPVSIA
SHGTALNVTVQSYNGRMDYGLIACRRAVPDITEIGDYMLAEHKLLMELTQKHPAAAGAAP
APVPPKTVEEPSDEAEVAAAPAAAKKRPAARKKAPVKVAAKKVAKPPVKAPLKAAAKKAK
AAAAPKPPARKAAPAKRSSAPRAAAA