Protein Info for GFF3775 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: Putative membrane protein YeiH

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 349 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 38 to 61 (24 residues), see Phobius details amino acids 79 to 98 (20 residues), see Phobius details amino acids 100 to 123 (24 residues), see Phobius details amino acids 134 to 152 (19 residues), see Phobius details amino acids 163 to 185 (23 residues), see Phobius details amino acids 225 to 246 (22 residues), see Phobius details amino acids 264 to 284 (21 residues), see Phobius details amino acids 290 to 312 (23 residues), see Phobius details amino acids 323 to 347 (25 residues), see Phobius details TIGR00698: conserved hypothetical protein" amino acids 14 to 348 (335 residues), 535.2 bits, see alignment E=3.2e-165 PF03601: Cons_hypoth698" amino acids 18 to 326 (309 residues), 391.6 bits, see alignment E=1e-121

Best Hits

Swiss-Prot: 100% identical to YEIH_SALTY: UPF0324 inner membrane protein YeiH (yeiH) from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)

KEGG orthology group: None (inferred from 100% identity to stm:STM2202)

Predicted SEED Role

"Putative membrane protein YeiH" in subsystem YeiH

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (349 amino acids)

>GFF3775 Putative membrane protein YeiH (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
MTELTLQNHCRTMWHFIPGLALSAVITGVALWGGAIPAVAGAGFSALTLAILLGMVIGNT
IYPQIWKQCDGGVLFAKQHLLRLGIILYGFRLTFSQIADVGISGIVIDVLTLSSTFMLAC
FLGQKVFGLDRHTSWLIGAGSSICGAAAVLATEPVVKAEASKVTVAVATVVIFGTIAIFL
YPAMYPLLAHWFSPETYGIYIGSTMHEVAQVVAAGHAVSPDAENAAVIAKMLRVMMLAPF
LIILAARVKQLSPATGAEKSKITIPWFAIFFIVVAIFNSFHLLPKAVVDMLVTLDTVLLA
MAMAALGLTTHVSALKKAGAKPLLMALALFAWLIIGGGAINVLIHSLIA