Protein Info for GFF3771 in Variovorax sp. SCN45

Annotation: no description

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 184 transmembrane" amino acids 45 to 70 (26 residues), see Phobius details amino acids 76 to 95 (20 residues), see Phobius details amino acids 106 to 124 (19 residues), see Phobius details amino acids 144 to 168 (25 residues), see Phobius details PF05656: DUF805" amino acids 34 to 136 (103 residues), 58.6 bits, see alignment E=4.2e-20

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (184 amino acids)

>GFF3771 no description (Variovorax sp. SCN45)
MTELTNANPYAAPRAAVDDIYEDNASVQPVKLWSAKGRIGRVRFLAYMLYSYLLCIIGAG
VLGGIIGAAGLGTPTGIGVVTVLALIPYFIFYVLVAIQRTHDMDWSAWTLLLALIPFVGL
IWVFKGGTQGRNRFGAPPPPNGVGVIIGAWLLPVIAVIGILAAIAIPAYQQYTVKAKAAQ
AAKP