Protein Info for GFF3770 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 179 PF01475: FUR" amino acids 31 to 149 (119 residues), 38.7 bits, see alignment E=5.3e-14

Best Hits

KEGG orthology group: K09823, Fur family transcriptional regulator, zinc uptake regulator (inferred from 78% identity to xau:Xaut_1888)

Predicted SEED Role

"Zinc uptake regulation protein ZUR" in subsystem Oxidative stress or Transport of Zinc

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (179 amino acids)

>GFF3770 hypothetical protein (Xanthobacter sp. DMC5)
VTRTDAHTKDHDHGQCVAGAMSRVEECCARKGLRMTPLRRNVMKALAESHVPLGAYEIVQ
KLSDAGDPAPPMSVYRVLDFLVAEGLAHRIESRNAYLVCAHTHDDTDVVVFLICERCGLT
REVGSHAIGRDLAWAARAAGFEPRQRVLEVAGTCAHCREAASAAPTPVTKGAAKETAGG