Protein Info for GFF3764 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: inversin protein alternative isoform, putative

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1527 PF20703: nSTAND1" amino acids 533 to 953 (421 residues), 148.4 bits, see alignment E=1.2e-46 PF12796: Ank_2" amino acids 1021 to 1103 (83 residues), 27.8 bits, see alignment 8e-10 amino acids 1120 to 1195 (76 residues), 35.2 bits, see alignment 3.8e-12

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1527 amino acids)

>GFF3764 inversin protein alternative isoform, putative (Hydrogenophaga sp. GW460-11-11-14-LB1)
VIEWPSLILKLLPVAENALMPGKFKELQGRLSCQALFHDIRKNHHLKRALRLSWISAAQA
IVNACEDDMKLCPDKELRDDFQRYLPVFTGAMNQVREAACNLSSKQDLPDSLIDDFVYHF
VESMPAHLAFNAGHAGKQYVTDRFLSDLRDITCAPEALPQALVSRAGLGVTSGSDQPRTF
GTLMFDDFARVLQDPAAYPAANASFLQVQHDVLKELSRENLVISQRLIKLVSGLDERIDQ
RLAQDPLAWLKGELFERLDDLSGQMSGVDDKVQQLGDKIDTLPNLIDERVTRALKTSFGE
AGIRAVLHEAPSVADWHDPLMQAGAPDHTRLIHYCLFEEPARFHQIRATFHRVLENMRIN
DALDLLPWHVPSIEYREQQAPRYFQNALASLCGEQHCATVLEMGPHLGASVACEPGFADR
LDALQWQEDGEPGVDIDLPNDLGKRSKAARRGVFPLTVETHLALSTVMSGRNLRILLRAK
PADVSRPAACFLTFMERLGVTVEAADALHKDKTWVLRYLQTLLGITPSYIENPYPRLEHY
TLEDAGRYHGREAERDAALALLARRRRDGRPAVLGVRGPSGCGKSSFVQARLVAALAKKG
HKALTLRRTDFLGADGETVEAARLLTEKMRFALGQPETEELATLYQGQPAFVVPSCCHHL
AKLLKKAGEPRMVICMDQFEEIVDDLADGKSVPEWTSLLGIIDHLAALPHMAIVFTLEDS
RFDKLASVAGASVVGDPDWLRLDDGHPDFLRTIVQAPLREAGFELDEAIVTRLVNEAIEL
DQSNGDIGSPLPLLSLKMHNLFREIRARGLDGNVDAPEKINAHTLGGVSLSIAEEIEALA
EEAWRRSGAEDNDLAHFLRPLVRVSKSDAEGARTNIVLGTVKAREFSTERKVDKAFTRLR
LLVPAASGWRLVHESVIHRWRRSAQWFADTKDELAREAALRKDAEAWHAQGRPPCTEATA
DQMEAAVLVLQAQIRNWATDLPVSLPDAERHLCDHALAIFDLSDTPLQPVPTSTRGGLYV
HLAASYGCTDLMRRYALRDPASLHANTQEHRSPLHCSAFSQAETTAYLLTQNADLHQEQK
GGGTALDIATWVQREDILDLLLAALPTPRTDAALPGQPLLAAAQVGNLAIVRKLEAAGYD
HTAMNPQKWTALHCAATNDNLDAYRHFLSRGDLEAENEHGLTPIDVAAANGHWKLIQASF
AHEATGRILAGKRSTGWTTLGLAADCKRYKTVEMLVPICDPNTTFDPSGAYEGYTALHLA
LHEYDKDRESASQRLRNQTALTVEALLSSPKTDVLIRAKGKSAHEMATGLPALQAAILAH
PSFDPLRPTDEGWTELMRAAKSGDRAKVTALFEQVKSRTHLDHVAEDGTSLALLLLQAGM
ADLVQPLLEAGEVDPWKAGNGYPGLLLAADTPATQDLFQWILAAIPERLQPATTARILTD
LIARDTARETDGALAQQLLARTDLTGDTRSLSHTMISAVQLGRLGMFLLLEKHGLEPALP
DAWGRQIEDLASDAVREALLNRRRLLS