Protein Info for GFF3752 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 297 TIGR01459: HAD hydrolase, TIGR01459 family" amino acids 21 to 257 (237 residues), 171.5 bits, see alignment E=2.1e-54 PF00702: Hydrolase" amino acids 26 to 250 (225 residues), 27.5 bits, see alignment E=6e-10 PF13344: Hydrolase_6" amino acids 29 to 125 (97 residues), 63 bits, see alignment E=3.6e-21 TIGR01460: HAD hydrolase, family IIA" amino acids 29 to 259 (231 residues), 145 bits, see alignment E=3.3e-46 PF13242: Hydrolase_like" amino acids 204 to 265 (62 residues), 42.4 bits, see alignment E=8e-15

Best Hits

KEGG orthology group: None (inferred from 82% identity to xau:Xaut_1844)

Predicted SEED Role

"HAD superfamily protein involved in N-acetyl-glucosamine catabolism"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (297 amino acids)

>GFF3752 hypothetical protein (Xanthobacter sp. DMC5)
MAETGTRTPLHAPPLVEGLSAFAGDYDLILCDVWGVLHNGVAAFPAACEALTKVRAGGAT
VVLVSNAPRPNRFIMGMLDGLGVPRSAYDAIVTSGDVTRDMLEARPGARVYHLGPARDVG
TFDGLDLTLTGLEEADLVVCTGLLDDDVETPEDYADALAAMKARELPFICANPDLVVERG
DKLIFCAGAIAQAYEQIGGKAFWCGKPYRPIYDTAFARAEVIRGEAVERARVLGIGDALR
TDIAGANDAGFDSLFISGGIHAQELRSIDGAVPDTESLADLFTGHAHPRGVMPRLAW