Protein Info for PS417_19175 in Pseudomonas simiae WCS417

Annotation: toxin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1532 PF03534: SpvB" amino acids 33 to 316 (284 residues), 299.1 bits, see alignment E=6.2e-93 PF12256: TcdB_toxin_midN" amino acids 655 to 821 (167 residues), 128.4 bits, see alignment E=4e-41 PF12255: TcdB_toxin_midC" amino acids 876 to 1023 (148 residues), 121.3 bits, see alignment E=7.1e-39

Best Hits

Predicted SEED Role

"Putative toxin subunit"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7TZH9 at UniProt or InterPro

Protein Sequence (1532 amino acids)

>PS417_19175 toxin (Pseudomonas simiae WCS417)
MNDDTLNLQVNTPALPKGGGAIQGTGKGWGDVGASGMATFEIPLPVSPARSYAPALSLTY
HSGAGNGPFGLGWSVPLPAVSRRTSHGVPAYTEHDVIVGLDAQIWLPERDAEGAIVSRRQ
TAFNDLPLTIAYTVTRYFPRLESRFDRIEHWHSATDPAGFWLIQSADGSQHFYGKTPLAR
IADPDRPHHVAQWLLQESLNAHGEHIYYHYKQETDPSRYPRDCRAQHYLERVCYGNFTAK
EQEQLYLWQTDDKPDMGWHFQLLFDYGERDLELDKRPTYQATREWPARPDPCSDFSFGFE
LRTLRCCNQMLMFHHFPKEAQMGADPLLVNRLLLEYRAPSHVSLLMGVHEQAFDSAGNSV
SRPPLECFYQSSQLKVDKSGYQPFSSLRGLHDSDRYQLVDLYGEGLPGVLYRADKSWYYR
EPLRPQHTKTGDEVIYGEARELARVPVADSARPIHQALADVDGDGRLDWLVAHPGMSGFF
SLDEQRNWSTFTPFDAFPSEFFHPQGVLADLMGTGHPDIAMIGPRSVRLYANRQKKGFEP
AIEVSHTLDDTLPIISASPNELVAFSDVLATGQQHLVRIRHNEVKCWPNLGRGRFAQGFV
LATLPFRYEMFKATHVLLVDLNGGGATDLLYLSADHLSIFLNKGGNGFEVQPIKIPWPEG
VRYDDHCQVNVVDVTGLGCPSLILTAAHQTPMHWRYDFFTRKPWLLLHTDNNMGAQASIK
YRSSAQEWLDEKRERPADGQPALCQLPFALLLVSQHTQRDEITGNQLTQRWRYRQAYYDR
TDREFRGFGLVLQTDTESSTDTQHLQGFSAPVRTKTWFHTGQSIDMPTLGHSTHDPQAKA
MGRTLVSRYKATSGAQPLDHHDDLISDPAPSLAREVARALSGSVLRVEVTAADPAQDAVP
YTVTQQRYLIRELAPNSAHTPYARLLPLALESISYQYEGVEDDPVCQHQINLRWDAYGYL
VHGVTLHYARRTNADSSPPTVLVDEHHKRWWHDTHDSAQQFYYLSETLAQHIHLDDAPHW
RLALPYRQRHNALVLGKAPAAGGLDLKRIAYEAFIDNLDGPLAAGAKRELSSLSVQRYRQ
AGGLGKTLEPGLATVQALTDYLESAELDDQALNVYKDIPAMPNQPAVDLVQKLSDSGYHP
MELFFLFPGEVPPKENRLWSIRRHFPRYGKATQFYRIRALRATEAHGETTLKHDPYMLQT
VRVKMPDGCVTKAEYDYRLLLPTKIVDPNGNIQEALYDGFGQMLVNTFRGREQSLNVGFD
ALERYRPLKDVTPGFAIEHAQSVLQSMARLHCYAPFSWMGAVDLALVKPEWVAKAYLLPS
GHIRAGARARLGARARQGSGRQGLSDSDKQLKALIDNARRTPVHGLMLQADRYPDDAAQQ
IRMTLTCWDGFGRTLQTKQKTESGLANAVDDKGNLLVDEVPDKAPGTLKKQLRQVQADPR
WRVSERVEYNNKGLVIRVYRPYFADKHAYVNDQSMRELGHCDRQFYDPLGRPTQTLTAGG
FMRRTTYWAWYTVNEDENDTEGVLQVTPLTEQ