Protein Info for GFF3704 in Sphingobium sp. HT1-2

Annotation: Flagellar hook-associated protein FlgL

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 281 PF00669: Flagellin_N" amino acids 6 to 139 (134 residues), 52.8 bits, see alignment E=4.5e-18 PF00700: Flagellin_C" amino acids 204 to 279 (76 residues), 25.5 bits, see alignment E=1.4e-09

Best Hits

KEGG orthology group: K02397, flagellar hook-associated protein 3 FlgL (inferred from 75% identity to sch:Sphch_2621)

Predicted SEED Role

"Flagellar hook-associated protein FlgL" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (281 amino acids)

>GFF3704 Flagellar hook-associated protein FlgL (Sphingobium sp. HT1-2)
MVGITNKIMLAEIRRQQQLSQSIVDGQTSISTGITLNKPSDDALAWVQVSDIGRAQAQQS
AWQTNVSYGTTRAGNAEANLEEINNLMTRAQELVTSARNGALNDTSAAAIAEELKTIRTT
VGELLNQKDYQGVSVFDDGQSVLVPVSRGLNLAVVGTKQEISENIDVNGTSMSLDDILGK
AIDAVEGGNDTDLASSLDAIQIGQNRVVVERAKQGVRADRLDVIGTRLTDVDINLSERRD
TLESADLTTVISNVKAQLLQLEAAQSAFARINQQTLFDLIS