Protein Info for GFF3704 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Transglutaminase-like

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 293 PF21295: Bact_transglu_N_2" amino acids 6 to 100 (95 residues), 27.1 bits, see alignment E=6.6e-10 PF01841: Transglut_core" amino acids 119 to 224 (106 residues), 88.1 bits, see alignment E=7.3e-29 PF04473: DUF553" amino acids 129 to 232 (104 residues), 30.9 bits, see alignment E=2.6e-11

Best Hits

KEGG orthology group: None (inferred from 62% identity to dar:Daro_0510)

Predicted SEED Role

"Transglutaminase-like"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (293 amino acids)

>GFF3704 Transglutaminase-like (Hydrogenophaga sp. GW460-11-11-14-LB1)
MVRIHLAIDLQYEIHPPGADFIFNVQAAHSPQQTVSWEQLQVSQPVPLLMHTDAATRTRT
LRLSAGPGPLSVRYRATVDIEHHVAPPDSVFETPVAQLPPEALAYIYPSRYCQSDCVTAM
ANQLFGQMPQGYRRVQAIQQWVQSQVTFESNTSNSMTSALDTMNDRKGVCRDFAHLMITM
CRALNIPARFTTAIDFGADPALGPTDFHAYVEAYVGHRWYIFDPSGTAIPMGFLRIGTGR
DAADASFATIFGGVDTHAPRIDISAQTSPRHGWLMPVHRPEALSTDGGWQAGA