Protein Info for GFF3703 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: AttF component of AttEFGH ABC transport system / AttG component of AttEFGH ABC transport system

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 transmembrane" amino acids 21 to 41 (21 residues), see Phobius details amino acids 249 to 272 (24 residues), see Phobius details amino acids 296 to 323 (28 residues), see Phobius details amino acids 343 to 366 (24 residues), see Phobius details amino acids 395 to 413 (19 residues), see Phobius details amino acids 419 to 443 (25 residues), see Phobius details amino acids 470 to 493 (24 residues), see Phobius details amino acids 721 to 744 (24 residues), see Phobius details amino acids 765 to 794 (30 residues), see Phobius details amino acids 812 to 834 (23 residues), see Phobius details PF12704: MacB_PCD" amino acids 23 to 220 (198 residues), 29 bits, see alignment E=1.2e-10 PF02687: FtsX" amino acids 251 to 373 (123 residues), 59.1 bits, see alignment E=4.5e-20 amino acids 725 to 839 (115 residues), 57 bits, see alignment E=1.9e-19

Best Hits

KEGG orthology group: K02004, (no description) (inferred from 62% identity to vpe:Varpa_3991)

Predicted SEED Role

"AttF component of AttEFGH ABC transport system / AttG component of AttEFGH ABC transport system"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (850 amino acids)

>GFF3703 AttF component of AttEFGH ABC transport system / AttG component of AttEFGH ABC transport system (Hydrogenophaga sp. GW460-11-11-14-LB1)
MRSLLSTFSLQELRHHPWRNASAVVAVMLGVALAFAVHLINASALAEFSSAVSSVNGQPD
VELRARQGTLDDALLARVAAQPGVALASPVLEGPVQVVASDGGRLSVKLVGVDALVVAGL
SPALMPVADGDGATRRFDLFAPDAVFLNAAAQQALAGQPRLPLQNGAVLRVAGRVNAPGA
PLLVMDVAAAQDLLDRVGQLSRIDLRLAPGARAAEVLAALALPANVIAQRPEQSGERVSN
LSRAYRVNLTVLALVALFTGAFLVFSVLSLSVARRQPQFALLGVLGLSSRERLRLVLAES
ALLGLLGSALGIALGTALAALALRLLGGDLGGGYFSGVTPPLLWSPLAAGVYLLLGVVAA
LVGGWWPAQATARLAPALALKGLGAPLRPGARRHTLALALVLLAAAMAWAPPVAGIPLAA
YVSVGLLLVGGIAALPLGVGWLLDRIAPRIARHALPVLAVERARRLRETAAVATSGVVAS
LALSVALTVMVASFRDSVTHWLDAVLPAQLYVRSVGSGAGDGSHLPAAFVAGVAGVEGVA
RVDTLRATPVQLAPERPAIALLTRPLETTPGGTLSLPLVGNALPAPAAPDGARVVAVYVS
EAMVDLYGAPPGSWLPALAQAFAEPQVRGTRFFVAGVWRDYARQHGSVVMDRADFVRLTG
DARVNDLALHLAEGADENTVRERIRAIAEAQGAADAIEFASVGQIRANSLRIFDRSFAVT
VWLQAVAIGIGLFGVAASFSAQVLARRREFGLLAHLGLTRSQILGVVALEGLAWTVLGAL
AGLALGLAVSLVLVHVVNPQSFHWTMDLVLPWARLLALCAAVVVAGTLTAWLAGQAAASR
DAVRAVKEDW