Protein Info for GFF3702 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: AttH component of AttEFGH ABC transport system

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 376 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF07143: CrtC" amino acids 53 to 232 (180 residues), 183.2 bits, see alignment E=6.6e-58 PF17186: Lipocalin_9" amino acids 235 to 370 (136 residues), 120 bits, see alignment E=7.7e-39

Best Hits

Predicted SEED Role

"AttH component of AttEFGH ABC transport system"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (376 amino acids)

>GFF3702 AttH component of AttEFGH ABC transport system (Hydrogenophaga sp. GW460-11-11-14-LB1)
MNPLRRQLLIASGATVLALPRAQAQTPHRPGEALRPRALHFPRDHGTHNETRTEWWYLTG
QAKDAAGRDFGFQVTFFRSRVDGTQGLRSALAAKQLLFAHAAITDVQSGRLLHDQRIARW
NGEPPTSTERGVFASAEDTHVVLRDWSLQRLPDTGHYTTRVVGDELGIDLSAVPEQAWLL
QGDQGFSRKGPDASQASFYVSQPHLAVQGTLTLKGLRFEVRGTAWLDHEWSEALLHPEAV
GWDWIGMNLFDGHSLTAFQLRRKDGSKLWAGGSFRAAGSAQSSTDLYRFSPGEVDFQPRR
WWTSPLTRARYPVEWVVRTPGDFYTVKAVIDPQELDSRSSTGTVYWEGLSDLIDSNGKPV
GRGYLEMTGYVQRLVL