Protein Info for GFF3693 in Xanthobacter sp. DMC5

Annotation: Lactate utilization protein A

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 439 PF13237: Fer4_10" amino acids 22 to 87 (66 residues), 30.5 bits, see alignment E=1.2e-10 PF13183: Fer4_8" amino acids 22 to 90 (69 residues), 41.8 bits, see alignment E=5.7e-14 PF12800: Fer4_4" amino acids 24 to 38 (15 residues), 14.4 bits, see alignment (E = 1.8e-05) amino acids 74 to 89 (16 residues), 14.2 bits, see alignment (E = 2.2e-05) PF12838: Fer4_7" amino acids 24 to 90 (67 residues), 41 bits, see alignment E=9.6e-14 PF13534: Fer4_17" amino acids 24 to 91 (68 residues), 39.4 bits, see alignment E=3.4e-13 PF13484: Fer4_16" amino acids 24 to 88 (65 residues), 31.1 bits, see alignment E=1.6e-10 PF02754: CCG" amino acids 189 to 275 (87 residues), 46.1 bits, see alignment E=1.9e-15 amino acids 322 to 405 (84 residues), 47.5 bits, see alignment E=7e-16

Best Hits

KEGG orthology group: K11473, glycolate oxidase iron-sulfur subunit (inferred from 83% identity to xau:Xaut_1868)

Predicted SEED Role

"Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF" in subsystem Glycolate, glyoxylate interconversions or Photorespiration (oxidative C2 cycle) (EC 1.1.99.14)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.1.99.14

Use Curated BLAST to search for 1.1.99.14

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (439 amino acids)

>GFF3693 Lactate utilization protein A (Xanthobacter sp. DMC5)
MQTHFSLAQLADPHVEAANSILRKCVHCGFCTATCPTYVLLGDELDSPRGRIYLIKDMLE
NDRPATQEEVKHIDRCLSCLSCMSTCPSGVNYMHLVDTARVHIEKTYSRPAPDRMIREVL
ARVLPYPDRFRLALMGALAGKPFAGLFAKVPALKPLAAMLRLAPGLPHGRAADDKGGVHP
AHGTRRARVALLKGCAQPVLNPGIDEAAIRLLTRQGVDVVRVKGEGCCGALVHHMGREEE
ALNFARNNVDVWIREMETEGLDAILVTTSGCGTPIKDYGYMLRLDPAYAEKAARVSAITR
DISEFLPTLDLPKAETPRGMRVAYHSACSLQHGQKVKTPPMDLLRRVGFEVVEPFDPHLC
CGSAGTYNMLQSEIAGQLKARKVATLEALAPDVIAAGNIGCMTQIGSGTGIPIVHTVELL
DWATGGPAPAALAGRAKAA