Protein Info for GFF3686 in Pseudomonas sp. DMC3

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 764 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF06934: CTI" amino acids 82 to 763 (682 residues), 976.7 bits, see alignment E=4e-298

Best Hits

KEGG orthology group: None (inferred from 95% identity to pfo:Pfl01_3106)

Predicted SEED Role

"cis/trans isomerase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (764 amino acids)

>GFF3686 hypothetical protein (Pseudomonas sp. DMC3)
MPHRFISLWLLVLSGSVAAQDPAISSSISYTRDIQPIFTEKCVACHACYDSACQLNLGSG
EGAARGASKMPVYDGERTQAAPTTRLFYDAFGKRAWQQKDFYSVLDAQGSQAALMARMLE
LGHKTPLTPNAKLPEDIVLGLNRNNLCAMPAEFDGYAGAHPKEGMPLAVTGLTDQQYQTL
QRWLASGAPIDEQSLAPSAKEAMQILQWENLLNAPGARQSLVGRWLFEHWYLAHIYFKDG
EPGHYFQWVRSRTPSGQPIDLIATRRPNDDPGTQVYYRLWPVQGVIVHKTHITYPLSAAK
MARIKSLFYSGNWQVNALPGYGPQSRANPFATFEAIPAQARYQFMLDNAEYFVRTFIRGP
VCRGQIATDVIRDNFWALFQAPEHDLYITDPNYRGQATPLLAMPGQNDDVGSVLSLWRNY
RDKRNEYEALRRDSYADLPAPSWSTLWAGNDNALLSIFRHFDSASVTKGLIGQVPQTMWL
FDYPLLERTYYQLAVNFDVFGNVSHQAQTRLYFDLIRNGAEQNFLRLMPADSREDYLNDW
YQDGGQFKMWLDYEAIDDDKPTALKLDEKDPKHDFAMQLLARYGDLNARPDPINRCDGAY
CSRPNIDPALQNAEQALSRLASRPAAGLKVIDQLPEATLLRVETASGKREVYSLLRNRAH
SNVAFLLGESLRYQPGLDTLTIYPGVLTSYPNFMFNVPAEQVPAFVDAMENARDANRFEK
IVERWGIRRSHPQFWLYFHDLSQYIHETDPVEEGVLDMNRYENL