Protein Info for GFF3683 in Variovorax sp. SCN45

Annotation: ATP synthase delta chain (EC 3.6.3.14)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• PF00213: OSCP
  • amino acids 7 to 174 (168 residues), 154.1 bits, E=2e-49
• TIGR01145: ATP synthase F1, delta subunit
  • amino acids 7 to 172 (166 residues), 116.4 bits, E=8.1e-38

Best Hits

Swiss-Prot: 96% identical to ATPD_VARPS: ATP synthase subunit delta (atpH) from Variovorax paradoxus (strain S110)

KEGG orthology group: K02113, F-type H+-transporting ATPase subunit delta [EC: 3.6.3.14] (inferred from 96% identity to vap:Vapar_4873)

Predicted SEED Role

"ATP synthase delta chain (EC 3.6.3.14)" in subsystem F0F1-type ATP synthase (EC 3.6.3.14)

KEGG Metabolic Maps

• Oxidative phosphorylation
• Photosynthesis

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.14

Use Curated BLAST to search for 3.6.3.14

Protein Sequence (176 amino acids)

>GFF3683 ATP synthase delta chain (EC 3.6.3.14) (Variovorax sp. SCN45)
MAELATIARPYAEALFKASSSDVAGTSAWLEKVAVIAASPELKQFADNPKATAEQVIGVV
AGAFGAPLAAPAQNFLGALLENGRFSVLPEIAKQFRALANAKSGSSDAVVYSAFPIDAAA
LANVSAALEKRFGRKLQVTVQQEPELIGGIRVVVGDEVLDTSVKARLEQMKVALAA