Protein Info for GFF3673 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: FIG004798: Putative cytoplasmic protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 410 transmembrane" amino acids 321 to 337 (17 residues), see Phobius details PF06224: AlkZ-like" amino acids 38 to 381 (344 residues), 260 bits, see alignment E=2.2e-81

Best Hits

Swiss-Prot: 78% identical to YCAQ_ECOLI: Uncharacterized protein YcaQ (ycaQ) from Escherichia coli (strain K12)

KEGG orthology group: K09927, hypothetical protein (inferred from 100% identity to spq:SPAB_02528)

MetaCyc: 78% identical to interstrand DNA crosslink repair glycosylase (Escherichia coli K-12 substr. MG1655)
3.2.2.-; 3.2.2.-

Predicted SEED Role

"FIG004798: Putative cytoplasmic protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (410 amino acids)

>GFF3673 FIG004798: Putative cytoplasmic protein (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
MSLPYLSLSQARCLHLAAQGLLKKPRRNALPGDVLAAISRMALLQIDTINVVARSPYLVL
FSRLGSYPQAWLDEALRRGELMEYWAHEACFLPRRDFKLIRHRMLSPEKMGWKYHAAWMH
EHAEEIEQLVRHIQEHGPVRSADFEHAQKGASGWWEWKPHKRHLEGLFTAGKVMVVERRN
FQRVYDLTPRVMPHWDDERDGLSQSQAENLMLDNSARSLGIFREQWLADYYRLKRPDLKG
WRESRAEQQQIIPVEVETLGRMWLHADLLSQLEPALNNALKATHSAVLSPFDPVVWDRKR
ATQLFGFNYRLECYTPAAKRQYGYFVLPLLYLGRLVGRMDAKMHRKTGVLEVISLYLEDD
IRPGVSLQKGIWQAISAFAAWQRASRVTLGQCPPGLFSTMRHGWEIDPAP