Protein Info for GFF3645 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: CBS domain protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 143 PF00571: CBS" amino acids 4 to 54 (51 residues), 42.3 bits, see alignment E=3.9e-15 amino acids 70 to 120 (51 residues), 46.5 bits, see alignment E=1.9e-16

Best Hits

Swiss-Prot: 42% identical to YHCV_BACSU: CBS domain-containing protein YhcV (yhcV) from Bacillus subtilis (strain 168)

KEGG orthology group: None (inferred from 56% identity to dia:Dtpsy_1821)

Predicted SEED Role

"CBS domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (143 amino acids)

>GFF3645 CBS domain protein (Hydrogenophaga sp. GW460-11-11-14-LB1)
MKQVKDVMTRGVRTLGPQDSVVLAAQAMEELDVGSLPVCDGQRILGMVTDRDIVVRGVAQ
DLVPGQTRLEDVMSAEVEWVFEDEGLAEVAAKMQQLQIRRLPVLDRDKRLVGILSLGDLA
ARGDVQQAGAALADISEPARPTR