Protein Info for GFF3644 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Ribonuclease BN (EC 3.1.-.-)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 284 transmembrane" amino acids 25 to 48 (24 residues), see Phobius details amino acids 84 to 107 (24 residues), see Phobius details amino acids 138 to 162 (25 residues), see Phobius details amino acids 173 to 197 (25 residues), see Phobius details amino acids 207 to 229 (23 residues), see Phobius details amino acids 238 to 263 (26 residues), see Phobius details PF03631: Virul_fac_BrkB" amino acids 15 to 273 (259 residues), 176.2 bits, see alignment E=5.1e-56

Best Hits

KEGG orthology group: K07058, membrane protein (inferred from 61% identity to vap:Vapar_2216)

Predicted SEED Role

"Ribonuclease BN (EC 3.1.-.-)" in subsystem LMPTP YfkJ cluster or tRNA processing (EC 3.1.-.-)

Isozymes

Compare fitness of predicted isozymes for: 3.1.-.-

Use Curated BLAST to search for 3.1.-.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (284 amino acids)

>GFF3644 Ribonuclease BN (EC 3.1.-.-) (Hydrogenophaga sp. GW460-11-11-14-LB1)
MIFRVLKATVVNWVEDDAPSMGAALAYYTLFSVAPILLIVISVAGLWFGEAAARGEIFAQ
LSHLVGSDSALTINSLVEDANRPAAGVIGTVVGLGALLIGATTVFAELRNAMDRIWRTGD
QRARGGGIVELLRARLVSLGLVLAIGFLLMVSLVLSAALAALGKWAAPWLGQLAVLAGVV
DFALSLGFLSVLFAMIFKWMPRVQLAWGDVWIGAVITALLLTVGKSLIGTYIGRSGVASV
FGAASSLVIFLLWVYYSAQVFLLGAEFTRAYTLRHQIDTEAPTP