Protein Info for GFF3640 in Variovorax sp. SCN45

Annotation: LSU ribosomal protein L22p (L17e)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 110 TIGR01044: ribosomal protein uL22" amino acids 6 to 108 (103 residues), 147 bits, see alignment E=9.3e-48 PF00237: Ribosomal_L22" amino acids 6 to 108 (103 residues), 129.6 bits, see alignment E=2.6e-42

Best Hits

Swiss-Prot: 100% identical to RL22_VARPS: 50S ribosomal protein L22 (rplV) from Variovorax paradoxus (strain S110)

KEGG orthology group: K02890, large subunit ribosomal protein L22 (inferred from 92% identity to pna:Pnap_0208)

MetaCyc: 64% identical to 50S ribosomal subunit protein L22 (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"LSU ribosomal protein L22p (L17e)" in subsystem Ribosome LSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (110 amino acids)

>GFF3640 LSU ribosomal protein L22p (L17e) (Variovorax sp. SCN45)
MSETRAVLRGVRLSVDKGRLVADLIRGKKVDQALNVLQFTQKKAAVIIKKVLESAIANAE
HNDGADIDELKVKTIYVEQGATLKRFTARAKGRGNRISKPTCHVYVTVGN