Protein Info for GFF3624 in Hydrogenophaga sp. GW460-11-11-14-LB1
Annotation: Tricarboxylate transport protein TctC
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 41% identical to BUGT_BORPE: Protein BugT (bugT) from Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
KEGG orthology group: None (inferred from 45% identity to adk:Alide2_3931)Predicted SEED Role
"Tricarboxylate transport protein TctC"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (323 amino acids)
>GFF3624 Tricarboxylate transport protein TctC (Hydrogenophaga sp. GW460-11-11-14-LB1) MQRRHLIQALGLGSLTSAWPAFAEAFPSRPITLVSPWAAGGTNDLLCRLLAREAGGVLGQ PMVVDNKPGASGVVGTTAVARSKPDGYTLTLGSTPGYATAPALYPNLPYDPLKDFTPIIG VATVPNVLVVPPSLPVNSVQELIAYVKARPGQVTYASVGNGSTQHLCAKLFERMTGTEMI HVPYKGTAPAMQDLLAGRVTLAFENMPPLLPQIRSGALKALAVTSSQRVAQLPDTPTLAA SGLADFGASVWYAVFAPAGVPAPIVAQLQNAFTQALRQPSVTAQLAQLGLTTLASDAAAT KAFVQADATKWGGIIRSAGITAD