Protein Info for PS417_18485 in Pseudomonas simiae WCS417

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 238 transmembrane" amino acids 6 to 22 (17 residues), see Phobius details amino acids 27 to 45 (19 residues), see Phobius details amino acids 57 to 76 (20 residues), see Phobius details amino acids 163 to 186 (24 residues), see Phobius details amino acids 197 to 216 (20 residues), see Phobius details PF06149: DUF969" amino acids 8 to 223 (216 residues), 300.1 bits, see alignment E=4.4e-94

Best Hits

KEGG orthology group: None (inferred from 99% identity to pfs:PFLU4176)

Predicted SEED Role

"FIG015373: Membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U3W8 at UniProt or InterPro

Protein Sequence (238 amino acids)

>PS417_18485 membrane protein (Pseudomonas simiae WCS417)
MQTVVNLWPLIGVLVIVVGFVLRFNPLLVVTAAAIATGLAAHFPLEKILATMGDGFLQTR
ALQLILLLPLAVIGLLERHGLRLHAQNWIARFERATVGRLLIIYLFVRESTAAMGLTSLG
GHPQMVRPLLAPMAEGAAEKRYGKLPDKLRHKVLAMCAATDNVGLFFGEDIFVAFGAIAL
MHTFLLGSGIDVEPLHIAVWGIPTAICAFIIHAIRLHRFDRRLTREMTPAAASVEAVQ