Protein Info for GFF3594 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: Type III secretion effector SseF

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 260 transmembrane" amino acids 64 to 84 (21 residues), see Phobius details amino acids 90 to 111 (22 residues), see Phobius details amino acids 155 to 177 (23 residues), see Phobius details amino acids 189 to 209 (21 residues), see Phobius details PF28311: SseF" amino acids 46 to 170 (125 residues), 135.9 bits, see alignment E=3.4e-44

Best Hits

KEGG orthology group: None (inferred from 100% identity to stm:STM1404)

Predicted SEED Role

"Type III secretion effector SseF"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (260 amino acids)

>GFF3594 Type III secretion effector SseF (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
MKIHIPSAASNIVDGNSPPSDIQAKEVSFPPPEIPAPGTPAAPVLLTPEQIRQQRDYAIH
FMQYTIRALGATVVFGLSVAAAVISGGAGLPIAILAGAALVIAIGDACCAYHNYQSICQQ
KEPLQTASDSVALVVSALALKCGASLNCANTLANCLSLLIRSGIAISMLVLPLQFPLPAA
ENIAASLDMGSVITSVSLTAIGAVLDYCLARPSGDDQENSVDELHADPSVLLAEQMAALC
QSATTPALMDSSDHTSRGEP