Protein Info for GFF3588 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Imidazolonepropionase (EC 3.5.2.7)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 413 transmembrane" amino acids 275 to 294 (20 residues), see Phobius details TIGR01224: imidazolonepropionase" amino acids 27 to 401 (375 residues), 453.8 bits, see alignment E=2.1e-140 PF01979: Amidohydro_1" amino acids 64 to 402 (339 residues), 67.6 bits, see alignment E=1.2e-22 PF07969: Amidohydro_3" amino acids 114 to 378 (265 residues), 39.3 bits, see alignment E=6.1e-14

Best Hits

Swiss-Prot: 67% identical to HUTI_POLSJ: Imidazolonepropionase (hutI) from Polaromonas sp. (strain JS666 / ATCC BAA-500)

KEGG orthology group: K01468, imidazolonepropionase [EC: 3.5.2.7] (inferred from 66% identity to ect:ECIAI39_0691)

MetaCyc: 61% identical to imidazolonepropionase (Pseudomonas fluorescens)
Imidazolonepropionase. [EC: 3.5.2.7]

Predicted SEED Role

"Imidazolonepropionase (EC 3.5.2.7)" in subsystem Histidine Degradation (EC 3.5.2.7)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.5.2.7

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (413 amino acids)

>GFF3588 Imidazolonepropionase (EC 3.5.2.7) (Hydrogenophaga sp. GW460-11-11-14-LB1)
MTATTLWRNARLATLDPNQGSDGWGLIEQGALLTDGGRIAWVGALADLPAQARPGREMDL
GGALVTPGLVDCHTHLVYGGQRAAEFEQRLTGVSYEAIARAGGGIRSSVAATRAASEAQL
LASARERARCLMAEGVTTLEIKSGYGLSLEAEARCLRVARRLGAELPLTVRTTFLGAHAV
PPEFDGQPNRYIDAVCDWLPELHAQGLVDAVDAFCERIGFSPAQTRQVFDTAAGLGLPVK
LHAEQLSDQDGAALAASYGALSCDHLEHLSAEGIAAMRAAGTVAVLLPGAYYFLRETRRP
PIEALRAAGVPMAVSTDHNPGTSPGLSLLLMASMACTLFRLTPLEAVQGITVHAARALGL
ADRGRLAADQRADFVAWQLEHPNELAYWFGRNPCHRVVVAGRERTLDGHAAPL