Protein Info for PS417_18355 in Pseudomonas simiae WCS417

Annotation: DNA-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 70 PF00313: CSD" amino acids 6 to 69 (64 residues), 101.4 bits, see alignment E=9.9e-34

Best Hits

Swiss-Prot: 97% identical to CAPA_PSEFR: Cold shock protein CapA (Fragment) (capA) from Pseudomonas fragi

KEGG orthology group: K03704, cold shock protein (beta-ribbon, CspA family) (inferred from 97% identity to ppg:PputGB1_3483)

Predicted SEED Role

"Cold shock protein CspG"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UEG4 at UniProt or InterPro

Protein Sequence (70 amino acids)

>PS417_18355 DNA-binding protein (Pseudomonas simiae WCS417)
MSNRQTGTVKWFNDEKGFGFITPQGGGDDLFVHFKAIESDGFKSLKEGQTVSFVAEKGQK
GMQAAQVRGE