Protein Info for PS417_18325 in Pseudomonas simiae WCS417

Annotation: phenylalanyl-tRNA synthetase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 338 PF02912: Phe_tRNA-synt_N" amino acids 20 to 87 (68 residues), 92.9 bits, see alignment E=9.8e-31 TIGR00468: phenylalanine--tRNA ligase, alpha subunit" amino acids 38 to 337 (300 residues), 362.8 bits, see alignment E=8.2e-113 PF01409: tRNA-synt_2d" amino acids 92 to 337 (246 residues), 364.7 bits, see alignment E=2.4e-113

Best Hits

Swiss-Prot: 99% identical to SYFA_PSEFS: Phenylalanine--tRNA ligase alpha subunit (pheS) from Pseudomonas fluorescens (strain SBW25)

KEGG orthology group: K01889, phenylalanyl-tRNA synthetase alpha chain [EC: 6.1.1.20] (inferred from 99% identity to pfs:PFLU4144)

Predicted SEED Role

"Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)" (EC 6.1.1.20)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 6.1.1.20

Use Curated BLAST to search for 6.1.1.20

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U1C2 at UniProt or InterPro

Protein Sequence (338 amino acids)

>PS417_18325 phenylalanyl-tRNA synthetase (Pseudomonas simiae WCS417)
MENLDALVAQALEAVQSAEDVNALEQIRVHYLGKKGELTQVMKTLGNLPAEERPQVGALI
NVAKERVTEVLNARKATMEEADLAAKLAAESIDVTLPGRGQASGGLHPITRTLERIEQFF
THIGYGIAEGPEVEDDYHNFEALNIPGHHPARSMHDTFYFNANMLLRTHTSPVQVRTMEA
NKPPIRIVCPGRVYRSDSDITHSPMFHQVEGLLVDRDINFADLKGTIEEFLRVFFEKELA
VRFRPSFFPFTEPSAEVDMECVMCSGKGCRVCKQTGWLEVMGCGMVHPNVLRMSGIDPEE
FSGFAFGMGVERLAMLRYGVNDLRLFFDNDLRFLAQFR