Protein Info for GFF3568 in Variovorax sp. SCN45

Annotation: Bll1370 protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 371 PF11017: DUF2855" amino acids 38 to 353 (316 residues), 389.6 bits, see alignment E=1e-120

Best Hits

KEGG orthology group: None (inferred from 88% identity to vap:Vapar_4968)

Predicted SEED Role

"Bll1370 protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (371 amino acids)

>GFF3568 Bll1370 protein (Variovorax sp. SCN45)
MSTTSLLIRKDQLATTRLHTATDEPLADGQVRVRIDSFALTSNNITYAAFGDAMSYWQFY
PTGEEGWGSIPVWGFASVVQSLHPGVAVGERLYGYWPMATGTVLSPGRLSPERFTDTAPH
RAELPAVYNQYFRCASDPLYTAESEDTQSLLRPLFITSWLIDDFMGDNDFFGAKTMLLSS
ASSKTAYGTAFQLHQREGIEVIGLTSPANVAFCESLGCYDRVVTYEALDTIAADTPCVYI
DFAGNGALRNAIHARFANLAFSSSIGGTHVEQLASKGAGKDLAGPRATLFFAPAQIKKRT
TEWGAEEFGRRMVAAWHHFIATATDANKPWLRAERHHGGEAVQAAYAQVLAGKGDPRAGH
VLSLYKQPGDA