Protein Info for PS417_18245 in Pseudomonas simiae WCS417

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 419 PF02492: cobW" amino acids 11 to 213 (203 residues), 176.4 bits, see alignment E=4.5e-56 PF07683: CobW_C" amino acids 262 to 379 (118 residues), 68.8 bits, see alignment E=3e-23

Best Hits

Swiss-Prot: 85% identical to P47K_PSECL: 47 kDa protein from Pseudomonas chlororaphis

KEGG orthology group: None (inferred from 87% identity to pfs:PFLU3211)

Predicted SEED Role

"Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7TZ72 at UniProt or InterPro

Protein Sequence (419 amino acids)

>PS417_18245 hypothetical protein (Pseudomonas simiae WCS417)
MIDGALTGRLPVTVLSGFLGAGKTTLLNHILRNREGLRVAVIVNDMSEVNIDAQEVQRDV
SLHRGSDELIEMSNGCICCTLRADLLEQISALARQQRFDYLLIESTGISEPMPVAETFAF
LDAEGFSLSELARLDTLVTVVDGSRFQALLESPDTVPRDDAQEDTPQRPLTDLLIEQVEY
ANVILVNKMDLIDEPGYQALHGILAGLNPSARIEPMTQGNVELSHILGTHLFDLPSLAAS
PGWMKTMEASDAPASESDTYGVTSWVYRERAPFHPQRLFDFLLRPWCNGRLLRSKGYFWL
ASRHLEIGLLVQSGKQFQWDYVGRWWTFIEPSQWPRDEYRLQSIMAKWDSIVGDCRQEWV
FIGQDLDTHRLQHELDNCLLSAQEIAAGPSAWQTLPGATDFDTRALSACPSPLLQADPL