Protein Info for GFF356 in Pseudomonas sp. DMC3

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

Best Hits

KEGG orthology group: None (inferred from 78% identity to pba:PSEBR_a5475)

Predicted SEED Role

"Uroporphyrinogen-III synthase (EC 4.2.1.75)" in subsystem Experimental tye or Heme and Siroheme Biosynthesis (EC 4.2.1.75)

MetaCyc Pathways

adenosylcobalamin biosynthesis II (aerobic) (31/33 steps found)
adenosylcobalamin biosynthesis I (anaerobic) (29/36 steps found)
superpathway of heme b biosynthesis from glutamate (9/10 steps found)
tetrapyrrole biosynthesis I (from glutamate) (6/6 steps found)
superpathway of heme b biosynthesis from glycine (6/8 steps found)
tetrapyrrole biosynthesis II (from glycine) (3/4 steps found)
superpathway of bacteriochlorophyll a biosynthesis (6/26 steps found)

KEGG Metabolic Maps

Porphyrin and chlorophyll metabolism

Isozymes

No predicted isozymes

Use Curated BLAST to search for 4.2.1.75

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (641 amino acids)

>GFF356 hypothetical protein (Pseudomonas sp. DMC3)
VTAWRLLLTRPADDCAALAEQLAGHGIFSSCLPLLDIVPLPLSDTIRQAISRLPACSAVI
VVSKPAARIAVDLLKSEGTAPLSMPWFSVGAATAGILREHGLDVSFPADGDDSEALLQLP
RLREALDQSGAQVTILRGEGGRELLAERLRALGASVEYLELYRRDLPAYPPNELPRRIEA
ERLNGLVVSSGQGFEHLRQMAGDAWPKIAQLPLFVPSPRVAELARAAGAQIVVDCCGASA
AALLTALREFPVPFSNAKDGYVSETALPKDDVQPALDAQVETPPPAKEPRRGNGLAIVAL
LLGAAGVAIGGWGVWQVRHLQSNTQQQSSQVQALNDQAQSLKLNEQRLTERLAQLPGADE
LAERQRLVTQLQGDQQRLNQRLETVLGASRKDWRLAEAEHLLRLASLRLSALQDISSAQA
LVQGADEILREQNDPGSFAAREQVAKTLVALRSTEQPDRTGLFLRLGALRDQVIDLTELA
PEYKDRGESLLGLTNDGDGASRWAQWWDKVSRYIRIDFNADKNVKPLLAGQSLSQVRLAL
SLALEQAQWAALNGQAAVYTQALAEARDVLKGNFNPDNPQSKVMLEQVAELSKEPVTVKT
PDLAGTLSAVQGYLERRNVNAEESVKPFAKPAANAAQEATP