Protein Info for GFF3534 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: TRAP transporter solute receptor, TAXI family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 442 transmembrane" amino acids 15 to 37 (23 residues), see Phobius details amino acids 346 to 368 (23 residues), see Phobius details PF16868: NMT1_3" amino acids 48 to 321 (274 residues), 76.1 bits, see alignment E=3.5e-25 PF09084: NMT1" amino acids 69 to 213 (145 residues), 27.7 bits, see alignment E=2.5e-10

Best Hits

KEGG orthology group: None (inferred from 65% identity to adk:Alide2_3485)

Predicted SEED Role

"TRAP transporter solute receptor, TAXI family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (442 amino acids)

>GFF3534 TRAP transporter solute receptor, TAXI family (Hydrogenophaga sp. GW460-11-11-14-LB1)
MPKTLRYTLLSLREMLLSAGPFAILTVALLCFTYWWLKPNPPDRVVLATGPAQSAYEAFG
KRYAEALARNGITVELLPSEGSSANLELLRTGQADLGFVQGGTADIGYDDEDSITSLGSL
FVEPLWLFYREDAAKRLRKTATVSKLSELKGWRVNVGTPGSGVPRLFSTLLEVNRLNDAE
MHLSQLEQTPATVAFLNGELDAVVFASAPESLMVQMLLQTPGVKLLDFAQSEAYSRRFGY
LTPVVMPQGVVDLAHNIPPRNVRLVASTTSLLAQANTHPAILQLFAQTATSLHSGASWFS
RAREYPSLEHSEVPIAPEAQRAIKGGSQPFLQRYLPFWLANLIERMWLAMGLIIALALPL
SRIVPPLYTFRIRKRVFRWYAELRDVEQRSESNSESAQDLLEQLDAMEAKVEKVVVPLSY
TDELYALRNNIHLVRKKLLRKA