Protein Info for GFF3528 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Cyanophycin synthase (EC 6.3.2.29)(EC 6.3.2.30)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 862 TIGR02068: cyanophycin synthetase" amino acids 3 to 853 (851 residues), 1173.5 bits, see alignment E=0 PF18921: Cyanophycin_syn" amino acids 34 to 122 (89 residues), 43.7 bits, see alignment E=6.3e-15 PF08443: RimK" amino acids 204 to 307 (104 residues), 26.4 bits, see alignment E=1.2e-09 PF02786: CPSase_L_D2" amino acids 206 to 288 (83 residues), 28.3 bits, see alignment E=3e-10 PF08245: Mur_ligase_M" amino acids 476 to 687 (212 residues), 75.1 bits, see alignment E=1.9e-24 PF02875: Mur_ligase_C" amino acids 712 to 795 (84 residues), 53.9 bits, see alignment E=4.7e-18

Best Hits

KEGG orthology group: K03802, cyanophycin synthetase [EC: 6.-.-.-] (inferred from 76% identity to lch:Lcho_4040)

Predicted SEED Role

"Cyanophycin synthase (EC 6.3.2.29)(EC 6.3.2.30)" in subsystem Cyanophycin Metabolism (EC 6.3.2.29, EC 6.3.2.30)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 6.-.-.-, 6.3.2.29, 6.3.2.30

Use Curated BLAST to search for 6.-.-.- or 6.3.2.29 or 6.3.2.30

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (862 amino acids)

>GFF3528 Cyanophycin synthase (EC 6.3.2.29)(EC 6.3.2.30) (Hydrogenophaga sp. GW460-11-11-14-LB1)
MDVSRIRPLRGPNLWSRHTCIEAIVSCEPHEMDLQALPDFERRLRELFPSVGPLEPSNPQ
EHLTLAHVLEATALALQAQAGCPVSFSRTSATLEPGVFQVVAQYSEEVVGRLAFDIAREL
LAAAGATEAQSFDVEAAIGRLRALDEDVRLGPSTGCIVDAAVARNIPYRRLTTGSLVQLG
WGSRQRRIWAAEVDSTSAVSESIAQDKDLTKALLGAAGVPVPEGRPVKDADDAWVAAMDI
GLPVVVKPQDGNQGKGVTVNIVSREHMDIAFRAAAEIGDVMVEKYLPGSDFRLLVVGDKV
VAASRREPPHVIGDGEHTVRELVDLVNADPRRGDGHATSLTKIRFDDIALARLDVQGLKP
ESVPEMGRRVVLRNNANLSTGGTATDVTDDLHPDVAARAVAAAQTVGLDICGVDVVCENV
HVPLEKQHGGVVEVNAAPGLRMHLSPSYGKGRPVGEAVIANMFEPGDDGRIPVVAVTGTN
GKTTTTRLIAHLMATNGMRVGMTNTDGVYVDGRQIDSGDCSGPKSARNVLLHPDVDAAVL
ETARGGMLREGLGFDQCQVAVVTNVGTGDHLGLNYITTVEDLAVLKRVIVMNVAPTGYAV
LNAADPIVAAMAAKCTGGVVFFAQDHDHPVLAAHRVQGKRTICVEGDRILVTEGSWRVQI
PLQGVPITRGGTIGFQKDNVMAAIGAAWCAGLDWDTIARGLASFSNDADNAPGRFNVMDY
RGATVIADYGHNPDAMRALVEAVNAMPARRRSVVISGAGDRRDEDIREQTAILGKAFDDV
LLFQDACQRGREDGEVLTLLREGLSGASRTKEVFEIRGEFVAIDAALERLKPGDLCLVLV
DQVEEALAHLAQRIREAGGSAG