Protein Info for GFF3527 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Cyanophycin synthase (EC 6.3.2.29)(EC 6.3.2.30)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 741 transmembrane" amino acids 689 to 708 (20 residues), see Phobius details TIGR02068: cyanophycin synthetase" amino acids 9 to 731 (723 residues), 859.7 bits, see alignment E=1.2e-262 PF18921: Cyanophycin_syn" amino acids 29 to 139 (111 residues), 129.6 bits, see alignment E=1.1e-41 PF08443: RimK" amino acids 222 to 327 (106 residues), 24.9 bits, see alignment E=3e-09 PF02786: CPSase_L_D2" amino acids 224 to 308 (85 residues), 30.8 bits, see alignment E=4.1e-11 PF13549: ATP-grasp_5" amino acids 226 to 290 (65 residues), 30.3 bits, see alignment E=5.4e-11

Best Hits

KEGG orthology group: K03802, cyanophycin synthetase [EC: 6.-.-.-] (inferred from 72% identity to lch:Lcho_4039)

Predicted SEED Role

"Cyanophycin synthase (EC 6.3.2.29)(EC 6.3.2.30)" in subsystem Cyanophycin Metabolism (EC 6.3.2.29, EC 6.3.2.30)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 6.-.-.-, 6.3.2.29, 6.3.2.30

Use Curated BLAST to search for 6.-.-.- or 6.3.2.29 or 6.3.2.30

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (741 amino acids)

>GFF3527 Cyanophycin synthase (EC 6.3.2.29)(EC 6.3.2.30) (Hydrogenophaga sp. GW460-11-11-14-LB1)
MSSKHDITLLRINYLRGPNIWTYRPVLEVWLDLGDLEDFPSNKLPGLTERLIEWLPALEE
HHCGVGERGGFIERLREGTWAGHILEHVVIELLNLAGMPTGFGQTRETSQRGVYRMVFRA
RDEAVARAALTEAHALLLAAIRQREGVASFDVPAAVARLVEQIDRSYLGPSTASIVAAAT
DRGIPHLRLNEGNLVQLGLGRRQRRIWTAETDRTSAIAGNIAHDKDLTKTLLASCGVPVP
EGQVVDSPQAAWEAAQEIGLPVVVKPSDANHGRGVSLDLSERADIEKAFSVAETEGSEVM
VERYVLGDEHRLLVVGGRVVAAARGESLSVVGDGRSTVEQLIDSQLNSDPRRGEAEEFPL
ETIRLDREPVMRLLLERQGLSGDAVPAAGRRVMVQRNGNVAIDCTDEVHPEVAHAVTLAA
RVVGLDVAGVDLVAQDIGRPLQAQGGAVVEVNAGPGLLMHLKPATGLSRPVGRAIVDHLF
DEGGNGRVPIVGVASSRHGNAIARLVGWLLHLSGYQVGLACQDGLFLGNRKVDARPSAHW
DAGQRLLMNREIDAVVLENGPAVILDDGLAYDRCTVGVVTDLDDVQGLERHDVRNTDQLY
RVLRTQVDVVLPDGVAVLNADDARVLEMAELCDGDVILYGMDAASPALQKHREAGSRTVS
VFEGQLVLAEGVRKAHRVRLDAPVVQGLLQSLGAHTLMAVAAAAWALAVSPELMAAGIET
AGLDVAPHPERSEPVTLDAAR