Protein Info for GFF3514 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 428 TIGR01554: phage major capsid protein, HK97 family" amino acids 36 to 425 (390 residues), 413 bits, see alignment E=6.5e-128 PF05065: Phage_capsid" amino acids 140 to 425 (286 residues), 300.5 bits, see alignment E=6.3e-94

Best Hits

KEGG orthology group: None (inferred from 84% identity to xau:Xaut_3155)

Predicted SEED Role

"Phage major capsid protein" in subsystem Phage capsid proteins

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (428 amino acids)

>GFF3514 hypothetical protein (Xanthobacter sp. DMC5)
MSLNIGAHQGLPETRSIHPGAPETKVAGTEQRIAVADFLSAFEAYKETNDARLAQMERRG
ADVLTTEQLARIDAALDAHQARLDALATKARRPALGAAPERTADASQHGAAFDTYARHGE
AGGLKALEAKALSAGSGADGGYLVPYEAEQEIGRRLSALSPIRALATVRVIGAGTYRKPF
MTSGPASGWAAETAARPQTDSPVLAELAFPAMELYAMPAATQALLDDAQVNIEEWLAQEV
DAAFAEQEGTAFVTGDGVAKPKGFLAYTKVADSAWAWDKVGYVATGAAGAFPSATPADPL
IDLVYALKGGYRQNATFVMNRKTQGAVRKLKDENGNYLWAPPAGVGQPASLLGFPVAESE
AMPDMAADAFAIAFGDFRRFYLVVDRAGVRVLRDPYSAKPYVLFYTTKRVGGGVQNFEAA
KLLKFAAS