Protein Info for GFF3511 in Pseudomonas sp. DMC3

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 326 PF20030: bpMoxR" amino acids 7 to 190 (184 residues), 57.4 bits, see alignment E=2.7e-19 PF07728: AAA_5" amino acids 37 to 167 (131 residues), 47.4 bits, see alignment E=5.2e-16 PF07726: AAA_3" amino acids 37 to 169 (133 residues), 207.2 bits, see alignment E=1.9e-65 PF00158: Sigma54_activat" amino acids 103 to 153 (51 residues), 20.2 bits, see alignment 1e-07 PF17863: AAA_lid_2" amino acids 253 to 318 (66 residues), 66 bits, see alignment E=5e-22

Best Hits

KEGG orthology group: K03924, MoxR-like ATPase [EC: 3.6.3.-] (inferred from 83% identity to pfl:PFL_2849)

Predicted SEED Role

"MoxR-like ATPase in aerotolerance operon"

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.-

Use Curated BLAST to search for 3.6.3.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (326 amino acids)

>GFF3511 hypothetical protein (Pseudomonas sp. DMC3)
MTALTDLNALQASIAEAVLGQDQVIRQILLGLLANGHLLLESLPGLAKTRTVKALAKHLD
AKMSRIQFTPDLLPSDITGAEVLHQVEGKNEIRFQPGPLFGNLILADEINRAPAKVQAAL
LEAMEERQITVAGNSHALPELFIVVATQNPIEQEGTYPLPEAQMDRFLMKVLLDYPSAEN
ESQVLRLLRNEEFAQGASTTPVKNFTLPQEVIFAARKEVSAVHVSPAIDTYLIDLINATR
HPADYDEDLARWIAIGASPRGGIGLDRCARADAWLQGQDFVSPDNVRAVVHPVLRHRLQL
SYDAVADGISADQVLDRILDKVAIPA