Protein Info for GFF3508 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: SMART domain SM00020; serine protease-like

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1450 transmembrane" amino acids 720 to 737 (18 residues), see Phobius details amino acids 832 to 849 (18 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1450 amino acids)

>GFF3508 SMART domain SM00020; serine protease-like (Hydrogenophaga sp. GW460-11-11-14-LB1)
MNAMIKPTTIPLAGYVYQTLVGFKLLAEWLDDPGRYDWVTFEADKEGAKGLDDLVAARRD
GLRELTQVKFTVDAFRPEHALSWEWLLSRKGSRGTSLLQKWSAAATEVGSTSVYSATLLT
NRRPDDEFAAHLTGAHVDYPRLHAELKSRIDTELGGTDKAQAFFSLFRFDHSFAGFESLE
RRVLDQLVPRHTDRDGWLNLYRNGLDWTIWKNAPAPAGRITMAVLRGVISARRPRILNQE
FRIPEDYRPPDREFADHFLAELTRQPVVRVLWGSPGQGKSTFLSFVCQRLGEVQLPFIRH
HYFLDLLDSSDRLTVNAAANSLIWQMRTQHPAVSLPPDPESNDLRGCIEACGAHYGAEGK
LFTVVVDGLDHVWRENDEDISPLEGLFRQLLPVPNNVSLLIGTQKIDASRLPGRLTDHVY
PAQWVELPLMDLQAVHHWLEAQYAGDSFDLPAGGRPDMLPDLAQAFIAVSGGHPLVLTYI
FERLASDHRELTAARVHEADPAPSPDVQAYYQGMWRRLSSLAKDALHLLASASFIWPEQG
LESCLNVQGSIVMPELGHLLVETDAGLRAFHGSLHVFVRAREDHQARARVLQPRVAAWLK
SDAPHYLQWAWLWIYQHSIGHSAELLAGTTRDWLVSSLAQGYSGEQVSRILEAAEDAAFD
QAEYGLLLRKRALKHRFENGLTFQVDDSSILWRSAKLVCNDPNVVDLLAAELNAASFEEL
HLLALMYLGLANIESAIEVQGKMRRRFNAKVAAQGFGRGEYEADAALLLEIIAKTNDFDP
PNVVRFLQRLEDDSFFRTFLAHIATTGTLERLLSFCDVAMPLRMRKQFEAEAVRMAGFTS
AALHVWPVFSRFGRHPLAMCWAQLYAPSAVPRWRALHRHPVLDMEGDRFQESDSGFATYL
HEAFFHCVSASLSLNGAPDSSAMPRPRARPWLAGALKRLDLVAQTVGKVLARGDATAFAL
PYRLLELERPDVNGYDAMFDYRAFRKAATLIAADLFLLTKPRSKLDHIPDGEWIAARSSG
PMFAEDLWRELFFNLGYRLVDPRLAAEEIRTQATAIASEVIRFSEAANELASLAEWATAY
GLRTDARQILESAYRWVIGYGWRKDSYLHHVIRMVEELAAADRETASRLVLKLAPIMERI
TDMTEDAGLYESDLAGLILKLFPQHFAAYYRHWLAQEEWYVAEQCFAVFAKAADGRDPMA
VAMAAFLWDHTGFAALEGRPETVALAKRWRELSSEGPRRTPPERETRAAPAGSPGAPAPN
PKDFPPANLDEYLAALEAMRQYELERKLLPEWFEHWRQAGAQAALLKAVKRVHGQKGLRR
RGSELLDLCFPVSLEAEGPARAFEWLVLAHIERSGWEPQFYGAEESECRLTAVVTHYPKR
WEEFLRRTTVREANRHGAGRVAAGTVLVSFLLELGETAKASALAETIVDISSGEFDMQPL
QRPAWLPEAV